Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | Lj0g3v0296119 |
| Transcript ID | Lj0g3v0296119.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: proline--tRNA ligase-like [Cicer arietinum] gi|502132994|ref|XP_004501611.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 19 | 19 | – | – | |
| Phobius | 1 | 5 | 5 | – | – | |
| Phobius | 1 | 19 | 19 | – | – | |
| Phobius | 6 | 14 | 9 | – | – | |
| Phobius | 15 | 19 | 5 | – | – | |
| Phobius | 20 | 501 | 482 | – | – | |
| MobiDBLite | 41 | 61 | 21 | – | – | |
| PANTHER | 50 | 501 | 452 | 2.90E-261 | – | |
| PANTHER | 50 | 501 | 452 | 2.90E-261 | ||
| Gene3D | 67 | 342 | 276 | 2.50E-108 | – | |
| Hamap | 67 | 501 | 435 | 38.952 | ||
| TIGRFAM | 68 | 489 | 422 | 1.60E-157 | ||
| CDD | 73 | 332 | 260 | 1.05E-166 | ||
| SUPERFAMILY | 73 | 336 | 264 | 1.39E-74 | – | |
| ProSiteProfiles | 94 | 342 | 249 | 24.16 | ||
| PRINTS | 125 | 143 | 19 | 1.90E-06 | ||
| Pfam | 161 | 330 | 170 | 2.30E-18 | ||
| PRINTS | 166 | 177 | 12 | 1.90E-06 | ||
| PRINTS | 196 | 204 | 9 | 1.90E-06 | ||
| PRINTS | 205 | 216 | 12 | 1.90E-06 | ||
| CDD | 338 | 500 | 163 | 2.69E-71 | – | |
| SUPERFAMILY | 338 | 470 | 133 | 1.21E-29 | ||
| Gene3D | 343 | 468 | 126 | 1.10E-39 | ||
| Pfam | 349 | 429 | 81 | 3.10E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | Proline-tRNA ligase activity | Catalysis of the reaction: ATP + L-proline + tRNA(Pro) = AMP + diphosphate + L-prolyl-tRNA(Pro). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | TRNA aminoacylation for protein translation | The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis. | ||
| Biological process | Prolyl-tRNA aminoacylation | The process of coupling proline to prolyl-tRNA, catalyzed by prolyl-tRNA synthetase. The prolyl-tRNA synthetase is a class-II synthetase. The activated amino acid is transferred to the 3'-OH group of a methionine-accetping tRNA. |
Expression pattern of Lj0g3v0296119.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…
A list of the top 25 highly co-expressed genes of Lj0g3v0296119.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.