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Lj1g3v1818790.1

Overview

Field Value
Gene ID Lj1g3v1818790
Transcript ID Lj1g3v1818790.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
CDD
cd00009
1 109 109 8.55E-11 –
PANTHER
PTHR11638:SF86
1 654 654 0 –
PANTHER
PTHR11638
1 654 654 0 –
Pfam
PF00004
2 105 104 4.90E-06
IPR003959
SUPERFAMILY
SSF52540
2 317 316 7.99E-71
IPR027417
Gene3D
G3DSA:3.40.50.300
2 106 105 2.20E-22
IPR027417
ProSitePatterns
PS00870
62 74 13 –
IPR018368
Gene3D
G3DSA:1.10.8.60
111 194 84 1.20E-33 –
Coils
Coil
180 200 21 – –
Coils
Coil
202 229 28 – –
Coils
Coil
240 260 21 – –
Coils
Coil
267 301 35 – –
SUPERFAMILY
SSF52540
318 624 307 6.42E-80
IPR027417
Gene3D
G3DSA:3.40.50.300
323 493 171 6.50E-57
IPR027417
CDD
cd00009
343 498 156 9.52E-19 –
Pfam
PF07724
368 537 170 1.50E-54
IPR003959
SMART
SM00382
369 510 142 2.30E-11
IPR003593
PRINTS
PR00300
373 391 19 3.00E-40
IPR001270
ProSitePatterns
PS00871
403 421 19 –
IPR028299
PRINTS
PR00300
418 436 19 3.00E-40
IPR001270
PRINTS
PR00300
447 465 19 3.00E-40
IPR001270
PRINTS
PR00300
480 494 15 3.00E-40
IPR001270
Gene3D
G3DSA:3.40.50.300
525 555 31 6.50E-57
IPR027417
Pfam
PF10431
544 624 81 2.50E-22
IPR019489
SMART
SM01086
544 638 95 2.30E-28
IPR019489
Gene3D
G3DSA:1.10.8.60
556 629 74 1.10E-26 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

Genome browser

LORE1 insertions 12

Expression data

Expression pattern

Expression pattern of Lj1g3v1818790.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v1818790.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.