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Lj1g3v3975720.1

Overview

Field Value
Gene ID Lj1g3v3975720
Transcript ID Lj1g3v3975720.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: elongation factor Tu GTP-binding domain-containing protein 1-like [Cicer arietinum] gi|502123462|ref|XP_004498119.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23115:SF13
1 181 181 2.90E-273 –
PANTHER
PTHR23115
1 181 181 2.90E-273 –
Gene3D
G3DSA:3.40.50.300
4 223 220 2.70E-56
IPR027417
SUPERFAMILY
SSF52540
6 349 344 3.66E-78
IPR027417
ProSiteProfiles
PS51722
10 241 232 43.473
IPR000795
TIGRFAM
TIGR00231
11 143 133 1.90E-12
IPR005225
Pfam
PF00009
11 339 329 6.90E-53 –
CDD
cd01885
13 234 222 3.55E-109 –
PRINTS
PR00315
14 27 14 1.10E-11
IPR000795
PRINTS
PR00315
60 68 9 1.10E-11
IPR000795
PRINTS
PR00315
80 90 11 1.10E-11
IPR000795
PRINTS
PR00315
96 107 12 1.10E-11
IPR000795
PRINTS
PR00315
132 141 10 1.10E-11
IPR000795
PANTHER
PTHR23115:SF13
206 224 19 2.90E-273 –
PANTHER
PTHR23115
206 224 19 2.90E-273 –
Gene3D
G3DSA:3.90.1430.10
227 334 108 4.60E-27 –
PANTHER
PTHR23115
247 254 8 2.90E-273 –
PANTHER
PTHR23115:SF13
247 254 8 2.90E-273 –
PANTHER
PTHR23115:SF13
339 351 13 2.90E-273 –
PANTHER
PTHR23115
339 351 13 2.90E-273 –
Gene3D
G3DSA:2.40.30.10
344 529 186 7.50E-41 –
SUPERFAMILY
SSF50447
392 526 135 8.67E-22
IPR009000
PANTHER
PTHR23115
393 412 20 2.90E-273 –
PANTHER
PTHR23115:SF13
393 412 20 2.90E-273 –
CDD
cd03700
423 517 95 1.58E-17 –
PANTHER
PTHR23115:SF13
433 661 229 2.90E-273 –
PANTHER
PTHR23115
433 661 229 2.90E-273 –
Pfam
PF03144
436 514 79 1.40E-08
IPR004161
SUPERFAMILY
SSF54980
530 604 75 3.17E-15
IPR009022
Gene3D
G3DSA:3.30.70.870
531 604 74 1.10E-16 –
CDD
cd01681
603 888 286 8.61E-37 –
SUPERFAMILY
SSF54211
606 659 54 8.34E-22
IPR020568
Gene3D
G3DSA:3.30.230.10
630 662 33 8.60E-34
IPR014721
Gene3D
G3DSA:3.30.230.10
710 757 48 8.60E-34
IPR014721
SUPERFAMILY
SSF54211
711 756 46 8.34E-22
IPR020568
PANTHER
PTHR23115
713 758 46 2.90E-273 –
PANTHER
PTHR23115:SF13
713 758 46 2.90E-273 –
SUPERFAMILY
SSF54211
800 883 84 8.34E-22
IPR020568
PANTHER
PTHR23115
801 828 28 2.90E-273 –
PANTHER
PTHR23115:SF13
801 828 28 2.90E-273 –
Gene3D
G3DSA:3.30.230.10
801 882 82 8.60E-34
IPR014721
SMART
SM00838
881 970 90 2.30E-20
IPR000640
Pfam
PF00679
882 966 85 9.20E-18
IPR000640
Gene3D
G3DSA:3.30.70.240
883 1003 121 3.10E-33
IPR000640
SUPERFAMILY
SSF54980
884 982 99 2.16E-24
IPR009022
CDD
cd04096
884 963 80 6.02E-36 –
PANTHER
PTHR23115:SF13
889 974 86 2.90E-273 –
PANTHER
PTHR23115
889 974 86 2.90E-273 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

Genome browser

LORE1 insertions 20

Expression data

Expression pattern

Expression pattern of Lj1g3v3975720.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v3975720.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.