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Lj1g3v4104770.1

Overview

Field Value
Gene ID Lj1g3v4104770
Transcript ID Lj1g3v4104770.1
Lotus japonicus genome version MG20 v3.0
Description DNA repair protein RAD5 [Medicago truncatula] gi|357509293|ref|XP_003624935.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SMART
SM00910
22 118 97 3.20E-20
IPR014905
Pfam
PF08797
23 115 93 2.90E-17
IPR014905
SUPERFAMILY
SSF52540
170 210 41 1.40E-40
IPR027417
Gene3D
G3DSA:3.40.50.300
185 425 241 1.00E-20
IPR027417
PANTHER
PTHR10799
185 282 98 1.10E-162 –
SMART
SM00487
189 432 244 5.10E-20
IPR014001
Pfam
PF00176
196 531 336 2.80E-67
IPR000330
ProSiteProfiles
PS51192
234 425 192 15.816
IPR014001
SUPERFAMILY
SSF52540
239 463 225 1.40E-40
IPR027417
CDD
cd00046
241 407 167 3.37E-08 –
MobiDBLite
mobidb-lite
270 296 27 – –
PANTHER
PTHR10799
298 537 240 1.10E-162 –
SUPERFAMILY
SSF52540
464 539 76 1.03E-46
IPR027417
SUPERFAMILY
SSF57850
563 620 58 3.33E-16 –
Gene3D
G3DSA:3.30.40.10
568 629 62 3.10E-16
IPR013083
Pfam
PF13920
572 618 47 5.10E-08 –
CDD
cd00162
574 617 44 5.40E-14 –
ProSiteProfiles
PS50089
575 614 40 12.357
IPR001841
SMART
SM00184
575 613 39 7.20E-05
IPR001841
PANTHER
PTHR10799
590 613 24 1.10E-162 –
ProSitePatterns
PS00518
590 599 10 –
IPR017907
SUPERFAMILY
SSF52540
638 798 161 1.03E-46
IPR027417
PANTHER
PTHR10799
641 791 151 1.10E-162 –
Gene3D
G3DSA:3.40.50.300
641 790 150 3.10E-15
IPR027417
ProSiteProfiles
PS51194
650 808 159 14.492
IPR001650
Pfam
PF00271
651 763 113 1.10E-13
IPR001650
CDD
cd00079
651 765 115 3.06E-15 –
SMART
SM00490
678 763 86 3.60E-16
IPR001650

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of
GO:0016818
Molecular function Hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides Catalysis of the hydrolysis of any acid anhydride which contains phosphorus.
Subterm of

Genome browser

LORE1 insertions 10

Expression data

Expression pattern

Expression pattern of Lj1g3v4104770.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4104770.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.