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Lj1g3v4419670.1

Overview

Field Value
Gene ID Lj1g3v4419670
Transcript ID Lj1g3v4419670.1
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: mRNA-capping enzyme-like [Glycine max] gi|356570562|ref|XP_003553454.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP
SignalP-noTM_EUK
1 22 22 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
1 5 5 – –
Phobius
TRANSMEMBRANE
6 25 20 – –
SUPERFAMILY
SSF52799
24 132 109 2.50E-26
IPR029021
Gene3D
G3DSA:3.90.190.10
24 133 110 3.60E-26
IPR029021
PANTHER
PTHR10367:SF0
24 386 363 2.70E-160 –
PANTHER
PTHR10367
24 386 363 2.70E-160 –
Phobius
CYTOPLASMIC_DOMAIN
26 386 361 – –
Pfam
PF00782
35 114 80 2.90E-11
IPR000340
ProSiteProfiles
PS50056
40 109 70 12.081
IPR000387
ProSitePatterns
PS00383
62 72 11 –
IPR016130
CDD
cd07895
176 386 211 4.72E-74 –
SUPERFAMILY
SSF56091
180 386 207 3.60E-36 –
Gene3D
G3DSA:3.30.470.30
197 334 138 3.30E-31 –
Pfam
PF01331
206 386 181 3.20E-62
IPR001339

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004484
Molecular function MRNA guanylyltransferase activity Catalysis of the reaction: GTP + (5')pp-Pur-mRNA = diphosphate + G(5')ppp-Pur-mRNA; G(5')ppp-Pur-mRNA is mRNA containing a guanosine residue linked 5' through three phosphates to the 5' position of the terminal residue.
Subterm of
GO:0004725
Molecular function Protein tyrosine phosphatase activity Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate.
Subterm of
GO:0006370
Biological process 7-methylguanosine mRNA capping Addition of the 7-methylguanosine cap to the 5' end of a nascent messenger RNA transcript.
Subterm of
GO:0008138
Molecular function Protein tyrosine/serine/threonine phosphatase activity Catalysis of the reactions: protein serine + H2O = protein serine + phosphate; protein threonine phosphate + H2O = protein threonine + phosphate; and protein tyrosine phosphate + H2O = protein tyrosine + phosphate.
Subterm of
GO:0016311
Biological process Dephosphorylation The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.
Subterm of
GO:0016791
Molecular function Phosphatase activity Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate.
Subterm of

Genome browser

LORE1 insertions 10

Expression data

Expression pattern

Expression pattern of Lj1g3v4419670.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4419670.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.