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Lj1g3v4419670.2

Overview

Field Value
Gene ID Lj1g3v4419670
Transcript ID Lj1g3v4419670.2
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: mRNA-capping enzyme-like [Glycine max] gi|356570562|ref|XP_003553454.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 32 32 – –
PIRSF
PIRSF036958
25 601 577 9.30E-212
IPR017074
PANTHER
PTHR10367
27 600 574 2.10E-269 –
PANTHER
PTHR10367:SF11
27 600 574 2.10E-269 –
Gene3D
G3DSA:3.90.190.10
35 227 193 1.20E-43
IPR029021
SUPERFAMILY
SSF52799
39 226 188 1.33E-42
IPR029021
SMART
SM00195
71 211 141 0.0014
IPR020422
Pfam
PF00782
90 208 119 3.60E-13
IPR000340
ProSiteProfiles
PS50056
134 203 70 12.081
IPR000387
ProSitePatterns
PS00383
156 166 11 –
IPR016130
CDD
cd07895
270 499 230 4.39E-85 –
SUPERFAMILY
SSF56091
275 499 225 5.76E-44 –
Gene3D
G3DSA:3.30.470.30
291 428 138 8.60E-31 –
Pfam
PF01331
300 498 199 4.80E-71
IPR001339
Gene3D
G3DSA:2.40.50.140
498 591 94 6.80E-22 –
SUPERFAMILY
SSF50249
501 600 100 6.00E-23
IPR012340
Pfam
PF03919
502 597 96 1.60E-18
IPR013846

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004484
Molecular function MRNA guanylyltransferase activity Catalysis of the reaction: GTP + (5')pp-Pur-mRNA = diphosphate + G(5')ppp-Pur-mRNA; G(5')ppp-Pur-mRNA is mRNA containing a guanosine residue linked 5' through three phosphates to the 5' position of the terminal residue.
Subterm of
GO:0004651
Molecular function Polynucleotide 5'-phosphatase activity Catalysis of the reaction: 5'-phosphopolynucleotide + H2O = polynucleotide + phosphate.
Subterm of
GO:0004725
Molecular function Protein tyrosine phosphatase activity Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate.
Subterm of
GO:0006370
Biological process 7-methylguanosine mRNA capping Addition of the 7-methylguanosine cap to the 5' end of a nascent messenger RNA transcript.
Subterm of
GO:0006470
Biological process Protein dephosphorylation The process of removing one or more phosphoric residues from a protein.
Subterm of
GO:0008138
Molecular function Protein tyrosine/serine/threonine phosphatase activity Catalysis of the reactions: protein serine + H2O = protein serine + phosphate; protein threonine phosphate + H2O = protein threonine + phosphate; and protein tyrosine phosphate + H2O = protein tyrosine + phosphate.
Subterm of
GO:0016311
Biological process Dephosphorylation The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.
Subterm of
GO:0016791
Molecular function Phosphatase activity Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate.
Subterm of
GO:0042025
Cellular component Host cell nucleus A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
Subterm of

Genome browser

LORE1 insertions 10

Expression data

Expression pattern

Expression pattern of Lj1g3v4419670.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4419670.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.