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Lj1g3v4690470.1

Overview

Field Value
Gene ID Lj1g3v4690470
Transcript ID Lj1g3v4690470.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: chaperone protein ClpC, chloroplastic-like [Glycine max] gi|356513459|ref|XP_003525431.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
CDD
cd00009
1 92 92 2.91E-05 –
PANTHER
PTHR11638
1 589 589 0 –
PANTHER
PTHR11638:SF119
1 589 589 0 –
Gene3D
G3DSA:3.40.50.300
4 100 97 1.40E-19
IPR027417
SUPERFAMILY
SSF52540
4 194 191 9.78E-46
IPR027417
Pfam
PF00004
8 74 67 6.50E-06
IPR003959
Coils
Coil
11 31 21 – –
ProSitePatterns
PS00870
52 64 13 –
IPR018368
Gene3D
G3DSA:1.10.8.60
101 185 85 8.80E-34 –
Coils
Coil
170 190 21 – –
ProSiteProfiles
PS50151
174 209 36 11.605
IPR001943
Pfam
PF02151
174 209 36 6.20E-09
IPR001943
SUPERFAMILY
SSF52540
249 566 318 3.36E-79
IPR027417
Gene3D
G3DSA:3.40.50.300
254 490 237 4.40E-57
IPR027417
CDD
cd00009
274 422 149 1.22E-16 –
Pfam
PF07724
299 473 175 2.10E-55
IPR003959
SMART
SM00382
300 481 182 9.60E-09
IPR003593
PRINTS
PR00300
304 322 19 3.40E-41
IPR001270
ProSitePatterns
PS00871
334 352 19 –
IPR028299
PRINTS
PR00300
349 367 19 3.40E-41
IPR001270
PRINTS
PR00300
378 396 19 3.40E-41
IPR001270
PRINTS
PR00300
411 425 15 3.40E-41
IPR001270
SMART
SM01086
480 570 91 6.50E-31
IPR019489
Pfam
PF10431
480 560 81 1.20E-23
IPR019489
Gene3D
G3DSA:1.10.8.60
491 573 83 4.00E-29 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj1g3v4690470.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4690470.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.