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| Field | Value |
|---|---|
| Gene ID | Lj1g3v4830300 |
| Transcript ID | Lj1g3v4830300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | ATP-binding cassette protein [Lotus japonicus] gi|396080274|dbj|BAM33973.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 43 | 43 | – | – | |
| MobiDBLite | 1 | 25 | 25 | – | – | |
| SUPERFAMILY | 33 | 354 | 322 | 5.23E-59 | ||
| Gene3D | 34 | 352 | 319 | 6.70E-58 | – | |
| TMHMM | 44 | 66 | 23 | – | – | |
| Phobius | 44 | 68 | 25 | – | – | |
| Pfam | 47 | 318 | 272 | 6.40E-59 | ||
| ProSiteProfiles | 48 | 335 | 288 | 47.611 | ||
| Phobius | 69 | 87 | 19 | – | – | |
| Phobius | 88 | 115 | 28 | – | – | |
| TMHMM | 91 | 113 | 23 | – | – | |
| Phobius | 116 | 170 | 55 | – | – | |
| TMHMM | 168 | 187 | 20 | – | – | |
| Phobius | 171 | 191 | 21 | – | – | |
| Phobius | 192 | 196 | 5 | – | – | |
| TMHMM | 192 | 214 | 23 | – | – | |
| Phobius | 197 | 215 | 19 | – | – | |
| Phobius | 216 | 273 | 58 | – | – | |
| TMHMM | 271 | 293 | 23 | – | – | |
| Phobius | 274 | 296 | 23 | – | – | |
| Phobius | 297 | 684 | 388 | – | – | |
| SUPERFAMILY | 359 | 606 | 248 | 2.36E-85 | ||
| ProSiteProfiles | 370 | 606 | 237 | 24.517 | ||
| Gene3D | 370 | 601 | 232 | 4.90E-83 | ||
| CDD | 370 | 605 | 236 | 2.69E-129 | – | |
| Pfam | 389 | 537 | 149 | 2.90E-35 | ||
| SMART | 397 | 583 | 187 | 1.00E-15 | ||
| PANTHER | 503 | 1244 | 742 | 0 | – | |
| PANTHER | 503 | 1244 | 742 | 0 | – | |
| ProSitePatterns | 509 | 523 | 15 | – | ||
| Gene3D | 673 | 984 | 312 | 3.00E-45 | – | |
| SUPERFAMILY | 673 | 988 | 316 | 8.63E-53 | ||
| TMHMM | 684 | 706 | 23 | – | – | |
| Phobius | 685 | 705 | 21 | – | – | |
| Pfam | 685 | 957 | 273 | 7.10E-53 | ||
| ProSiteProfiles | 686 | 962 | 277 | 42.456 | ||
| Phobius | 706 | 725 | 20 | – | – | |
| Phobius | 726 | 750 | 25 | – | – | |
| TMHMM | 727 | 749 | 23 | – | – | |
| Phobius | 751 | 814 | 64 | – | – | |
| Phobius | 815 | 842 | 28 | – | – | |
| TMHMM | 820 | 842 | 23 | – | – | |
| Phobius | 843 | 907 | 65 | – | – | |
| TMHMM | 907 | 929 | 23 | – | – | |
| Phobius | 908 | 929 | 22 | – | – | |
| Phobius | 930 | 934 | 5 | – | – | |
| Phobius | 935 | 960 | 26 | – | – | |
| TMHMM | 939 | 961 | 23 | – | – | |
| Phobius | 961 | 1249 | 289 | – | – | |
| SUPERFAMILY | 996 | 1241 | 246 | 5.44E-89 | ||
| Gene3D | 1003 | 1236 | 234 | 3.20E-84 | ||
| CDD | 1004 | 1242 | 239 | 2.14E-131 | – | |
| ProSiteProfiles | 1004 | 1241 | 238 | 24.163 | ||
| Pfam | 1024 | 1172 | 149 | 3.00E-35 | ||
| SMART | 1031 | 1224 | 194 | 6.50E-16 | ||
| ProSitePatterns | 1144 | 1158 | 15 | – | ||
| Coils | 1249 | 1249 | 1 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. | ||
| Molecular function | ATPase activity, coupled to transmembrane movement of substances | Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj1g3v4830300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v4830300.2, powered by CORGI.
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