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| Field | Value |
|---|---|
| Gene ID | Lj2g3v0855230 |
| Transcript ID | Lj2g3v0855230.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] gi|224143631|ref|XP_002325023.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | – | – | |
| TMHMM | 13 | 35 | 23 | – | – | |
| Phobius | 20 | 47 | 28 | – | – | |
| SUPERFAMILY | 22 | 336 | 315 | 3.66E-48 | ||
| Gene3D | 22 | 338 | 317 | 4.00E-48 | – | |
| ProSiteProfiles | 27 | 317 | 291 | 40.95 | ||
| Pfam | 42 | 288 | 247 | 4.00E-47 | ||
| Phobius | 48 | 75 | 28 | – | – | |
| TMHMM | 74 | 96 | 23 | – | – | |
| Phobius | 76 | 95 | 20 | – | – | |
| Phobius | 96 | 152 | 57 | – | – | |
| TMHMM | 151 | 173 | 23 | – | – | |
| Phobius | 153 | 173 | 21 | – | – | |
| Phobius | 174 | 178 | 5 | – | – | |
| TMHMM | 178 | 200 | 23 | – | – | |
| Phobius | 179 | 200 | 22 | – | – | |
| Phobius | 201 | 253 | 53 | – | – | |
| Phobius | 254 | 276 | 23 | – | – | |
| TMHMM | 254 | 276 | 23 | – | – | |
| Phobius | 277 | 664 | 388 | – | – | |
| SUPERFAMILY | 343 | 590 | 248 | 3.84E-86 | ||
| ProSiteProfiles | 352 | 588 | 237 | 24.016 | ||
| Gene3D | 352 | 584 | 233 | 2.70E-80 | ||
| CDD | 353 | 590 | 238 | 1.73E-125 | – | |
| Pfam | 370 | 519 | 150 | 3.50E-32 | ||
| SMART | 379 | 571 | 193 | 3.60E-16 | ||
| PANTHER | 485 | 1110 | 626 | 0 | – | |
| PANTHER | 485 | 1110 | 626 | 0 | – | |
| ProSitePatterns | 491 | 505 | 15 | – | ||
| MobiDBLite | 596 | 650 | 55 | – | – | |
| SUPERFAMILY | 647 | 966 | 320 | 2.09E-55 | ||
| Gene3D | 651 | 967 | 317 | 1.60E-49 | – | |
| Phobius | 665 | 694 | 30 | – | – | |
| ProSiteProfiles | 665 | 952 | 288 | 38.365 | ||
| Pfam | 666 | 935 | 270 | 1.00E-49 | ||
| TMHMM | 672 | 694 | 23 | – | – | |
| Phobius | 695 | 705 | 11 | – | – | |
| Phobius | 706 | 724 | 19 | – | – | |
| TMHMM | 707 | 729 | 23 | – | – | |
| Phobius | 725 | 796 | 72 | – | – | |
| TMHMM | 794 | 816 | 23 | – | – | |
| Phobius | 797 | 825 | 29 | – | – | |
| Phobius | 826 | 887 | 62 | – | – | |
| Phobius | 888 | 911 | 24 | – | – | |
| TMHMM | 888 | 910 | 23 | – | – | |
| Phobius | 912 | 1110 | 199 | – | – | |
| SUPERFAMILY | 981 | 1110 | 130 | 5.47E-37 | ||
| Gene3D | 988 | 1110 | 123 | 6.00E-35 | ||
| Pfam | 1010 | 1099 | 90 | 1.60E-15 | ||
| SMART | 1016 | 1099 | 84 | 6.5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. | ||
| Molecular function | ATPase activity, coupled to transmembrane movement of substances | Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj2g3v0855230.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v0855230.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.