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| Field | Value |
|---|---|
| Gene ID | Lj2g3v0866690 |
| Transcript ID | Lj2g3v0866690.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 3a-like [Cicer arietinum] gi|502132552|ref|XP_004501416.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 1138 | 1138 | 0 | – | |
| PANTHER | 1 | 1138 | 1138 | 0 | – | |
| Gene3D | 19 | 158 | 140 | 1.40E-24 | ||
| SUPERFAMILY | 21 | 155 | 135 | 1.98E-20 | ||
| CDD | 24 | 137 | 114 | 3.73E-16 | – | |
| ProSiteProfiles | 31 | 179 | 149 | 14.034 | ||
| Pfam | 34 | 138 | 105 | 1.10E-17 | ||
| SMART | 46 | 141 | 96 | 1.40E-15 | ||
| ProSiteProfiles | 208 | 298 | 91 | 28.211 | ||
| Pfam | 208 | 294 | 87 | 1.00E-25 | ||
| SMART | 507 | 666 | 160 | 4.20E-07 | ||
| SUPERFAMILY | 528 | 600 | 73 | 3.14E-13 | ||
| Pfam | 528 | 663 | 136 | 1.80E-13 | ||
| Gene3D | 529 | 642 | 114 | 5.80E-11 | – | |
| ProSiteProfiles | 530 | 642 | 113 | 19.426 | ||
| SUPERFAMILY | 630 | 642 | 13 | 3.14E-13 | ||
| SUPERFAMILY | 660 | 773 | 114 | 8.89E-30 | ||
| ProSiteProfiles | 667 | 839 | 173 | 24.652 | ||
| Gene3D | 685 | 761 | 77 | 4.30E-32 | ||
| CDD | 686 | 850 | 165 | 2.65E-32 | ||
| SMART | 686 | 859 | 174 | 1.00E-26 | ||
| Pfam | 704 | 836 | 133 | 3.50E-22 | ||
| Gene3D | 807 | 853 | 47 | 4.30E-32 | ||
| SUPERFAMILY | 819 | 856 | 38 | 8.89E-30 | ||
| Gene3D | 879 | 1044 | 166 | 5.00E-43 | ||
| SUPERFAMILY | 879 | 1045 | 167 | 3.66E-35 | ||
| ProSiteProfiles | 880 | 1025 | 146 | 33.267 | ||
| SMART | 895 | 1048 | 154 | 2.50E-32 | ||
| CDD | 896 | 1048 | 153 | 8.03E-34 | ||
| Pfam | 916 | 1024 | 109 | 1.80E-19 | ||
| ProSiteProfiles | 1096 | 1119 | 24 | 8.809 | ||
| CDD | 1209 | 1292 | 84 | 6.77E-05 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ribonuclease III activity | Catalysis of the endonucleolytic cleavage of RNA with 5'-phosphomonoesters and 3'-OH termini; makes two staggered cuts in both strands of dsRNA, leaving a 3' overhang of 2 nt. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. | ||
| Molecular function | Endoribonuclease activity, producing 5'-phosphomonoesters | Catalysis of the hydrolysis of ester linkages within ribonucleic acids by creating internal breaks to yield 5'-phosphomonoesters. |
Expression pattern of Lj2g3v0866690.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v0866690.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.