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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1022510 |
| Transcript ID | Lj2g3v1022510.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: ABC transporter B family member 15-like [Cicer arietinum] gi|502090823|ref|XP_004489352.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | – | – | |
| ProSiteProfiles | 1 | 247 | 247 | 37.996 | ||
| TMHMM | 4 | 26 | 23 | – | – | |
| Gene3D | 4 | 261 | 258 | 4.10E-44 | – | |
| SUPERFAMILY | 5 | 266 | 262 | 5.89E-43 | ||
| Phobius | 6 | 26 | 21 | – | – | |
| Pfam | 7 | 224 | 218 | 1.40E-41 | ||
| Phobius | 27 | 94 | 68 | – | – | |
| Phobius | 95 | 118 | 24 | – | – | |
| TMHMM | 100 | 122 | 23 | – | – | |
| Phobius | 119 | 187 | 69 | – | – | |
| TMHMM | 187 | 206 | 20 | – | – | |
| Phobius | 188 | 207 | 20 | – | – | |
| Phobius | 208 | 218 | 11 | – | – | |
| TMHMM | 218 | 240 | 23 | – | – | |
| Phobius | 219 | 239 | 21 | – | – | |
| Phobius | 240 | 610 | 371 | – | – | |
| SUPERFAMILY | 275 | 520 | 246 | 1.15E-87 | ||
| Gene3D | 282 | 514 | 233 | 1.50E-83 | ||
| CDD | 282 | 520 | 239 | 1.58E-139 | – | |
| ProSiteProfiles | 282 | 518 | 237 | 23.943 | ||
| Pfam | 300 | 449 | 150 | 1.40E-33 | ||
| SMART | 309 | 501 | 193 | 8.10E-17 | ||
| PANTHER | 415 | 1178 | 764 | 0 | – | |
| PANTHER | 415 | 1178 | 764 | 0 | – | |
| ProSitePatterns | 421 | 435 | 15 | – | ||
| SUPERFAMILY | 585 | 910 | 326 | 2.22E-59 | ||
| Gene3D | 589 | 907 | 319 | 6.60E-53 | – | |
| Pfam | 605 | 873 | 269 | 1.80E-51 | ||
| ProSiteProfiles | 610 | 891 | 282 | 41.675 | ||
| TMHMM | 611 | 633 | 23 | – | – | |
| Phobius | 611 | 633 | 23 | – | – | |
| Phobius | 634 | 644 | 11 | – | – | |
| Phobius | 645 | 666 | 22 | – | – | |
| TMHMM | 646 | 668 | 23 | – | – | |
| Phobius | 667 | 730 | 64 | – | – | |
| TMHMM | 724 | 746 | 23 | – | – | |
| Phobius | 731 | 764 | 34 | – | – | |
| TMHMM | 748 | 770 | 23 | – | – | |
| Phobius | 765 | 826 | 62 | – | – | |
| Phobius | 827 | 850 | 24 | – | – | |
| Phobius | 851 | 1186 | 336 | – | – | |
| SUPERFAMILY | 916 | 1169 | 254 | 2.39E-87 | ||
| Gene3D | 925 | 1156 | 232 | 3.40E-83 | ||
| CDD | 926 | 1169 | 244 | 8.85E-140 | – | |
| ProSiteProfiles | 926 | 1166 | 241 | 25.143 | ||
| Pfam | 945 | 1097 | 153 | 1.30E-34 | ||
| SMART | 953 | 1149 | 197 | 1.00E-14 | ||
| ProSitePatterns | 1069 | 1083 | 15 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. | ||
| Molecular function | ATPase activity, coupled to transmembrane movement of substances | Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj2g3v1022510.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1022510.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.