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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1599820 |
| Transcript ID | Lj2g3v1599820.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: glutamate receptor 3.6-like [Glycine max] gi|356529661|ref|XP_003533407.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 785 | 785 | 1.00E-295 | ||
| Phobius | 1 | 1 | 1 | – | – | |
| SignalP | 1 | 22 | 22 | – | – | |
| SignalP | 1 | 25 | 25 | – | – | |
| Phobius | 1 | 25 | 25 | – | – | |
| Phobius | 2 | 13 | 12 | – | – | |
| PANTHER | 6 | 785 | 780 | 0 | – | |
| PANTHER | 6 | 785 | 780 | 0 | – | |
| Phobius | 14 | 25 | 12 | – | – | |
| Phobius | 26 | 594 | 569 | – | – | |
| SUPERFAMILY | 32 | 422 | 391 | 1.18E-77 | ||
| Gene3D | 33 | 151 | 119 | 1.10E-27 | – | |
| CDD | 36 | 430 | 395 | 1.83E-113 | – | |
| Pfam | 51 | 413 | 363 | 3.20E-78 | ||
| PRINTS | 104 | 130 | 27 | 3.10E-10 | ||
| PRINTS | 136 | 155 | 20 | 3.10E-10 | ||
| Gene3D | 152 | 297 | 146 | 1.40E-23 | – | |
| PRINTS | 155 | 171 | 17 | 3.10E-10 | ||
| PRINTS | 171 | 188 | 18 | 3.10E-10 | ||
| Gene3D | 298 | 402 | 105 | 1.10E-27 | – | |
| Gene3D | 404 | 421 | 18 | 1.50E-26 | – | |
| SUPERFAMILY | 449 | 598 | 150 | 4.67E-37 | – | |
| SUPERFAMILY | 454 | 466 | 13 | 1.18E-77 | ||
| Gene3D | 454 | 591 | 138 | 1.50E-26 | – | |
| SMART | 475 | 785 | 311 | 1.20E-24 | ||
| Pfam | 499 | 755 | 257 | 1.80E-12 | ||
| Gene3D | 592 | 700 | 109 | 8.90E-32 | – | |
| Phobius | 595 | 614 | 20 | – | – | |
| TMHMM | 595 | 614 | 20 | – | – | |
| Pfam | 596 | 699 | 104 | 1.50E-28 | ||
| Phobius | 615 | 629 | 15 | – | – | |
| Phobius | 630 | 647 | 18 | – | – | |
| Phobius | 648 | 658 | 11 | – | – | |
| TMHMM | 658 | 680 | 23 | – | – | |
| Phobius | 659 | 682 | 24 | – | – | |
| Phobius | 683 | 785 | 103 | – | – | |
| Gene3D | 701 | 771 | 71 | 6.30E-06 | – | |
| SUPERFAMILY | 701 | 784 | 84 | 4.67E-37 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | G protein-coupled receptor activity | Combining with an extracellular signal and transmitting the signal across the membrane by activating an associated G-protein; promotes the exchange of GDP for GTP on the alpha subunit of a heterotrimeric G-protein complex. | ||
| Biological process | G protein-coupled receptor signaling pathway | A series of molecular signals that proceeds with an activated receptor promoting the exchange of GDP for GTP on the alpha-subunit of an associated heterotrimeric G-protein complex. The GTP-bound activated alpha-G-protein then dissociates from the beta- and gamma-subunits to further transmit the signal within the cell. The pathway begins with receptor-ligand interaction, or for basal GPCR signaling the pathway begins with the receptor activating its G protein in the absence of an agonist, and ends with regulation of a downstream cellular process, e.g. transcription. The pathway can start from the plasma membrane, Golgi or nuclear membrane (PMID:24568158 and PMID:16902576). | ||
| Molecular function | Ligand-gated ion channel activity | Enables the transmembrane transfer of an ion by a channel that opens when a specific ligand has been bound by the channel complex or one of its constituent parts. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of Lj2g3v1599820.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1599820.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.