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Lj2g3v3106340.2

Overview

Field Value
Gene ID Lj2g3v3106340
Transcript ID Lj2g3v3106340.2
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: crooked neck-like protein 1-like [Cicer arietinum] gi|502115405|ref|XP_004495196.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11246
1 414 414 4.20E-278 –
PANTHER
PTHR11246:SF14
1 414 414 4.20E-278 –
MobiDBLite
mobidb-lite
1 35 35 – –
SMART
SM00386
71 103 33 1.3
IPR003107
SUPERFAMILY
SSF48452
81 414 334 8.76E-55
IPR011990
ProSiteProfiles
PS50293
91 192 102 11.652
IPR013026
Gene3D
G3DSA:1.25.40.10
93 227 135 1.20E-14
IPR011990
Pfam
PF05843
93 210 118 3.20E-05
IPR008847
SMART
SM00386
105 137 33 1.90E-05
IPR003107
SMART
SM00386
139 171 33 7.90E-05
IPR003107
SMART
SM00386
173 208 36 0.0045
IPR003107
SMART
SM00386
210 244 35 3
IPR003107
SMART
SM00386
254 286 33 350
IPR003107
Gene3D
G3DSA:1.25.40.10
313 414 102 3.80E-07
IPR011990
SMART
SM00386
316 352 37 1.90E-04
IPR003107
SMART
SM00386
354 385 32 330
IPR003107
SMART
SM00386
387 414 28 190
IPR003107

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0006396
Biological process RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
Subterm of
Part of
GO:0006397
Biological process MRNA processing Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj2g3v3106340.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v3106340.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.