Domain Predictions — View

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PF05843

Source: Pfam

Description

Suppressor of forked protein (Suf)

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005634 View details of GO:0005634 AmiGO InterPro QuickGO	Cellular component	Nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.	Subterm of GO:0043231
GO:0006397 View details of GO:0006397 AmiGO InterPro QuickGO	Biological process	MRNA processing	Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.	Subterm of GO:0006396 GO:0016071

Associated Lotus transcripts 5

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0173949.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: LOW QUALITY PROTEIN: cleavage stimulation factor subunit 3-like [Cicer arietinum] gi\|502091797\|ref\|XP_004489637.1\|	Domains IPR003107 IPR008847 IPR011990 PF05843 PTHR19980 SM00386 SSF48452	7
Lj0g3v0198159.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: protein RRP5 homolog [Cicer arietinum] gi\|502167476\|ref\|XP_004514152.1\|	Domains Coil G3DSA:1.25.40.10 G3DSA:2.40.50.140 IPR003029 IPR003107 IPR008847 IPR011990 IPR012340 IPR022967 PF00575 PF05843 PS50126 PTHR23270 PTHR23270:SF10 SM00316 SM00386 SSF48452 SSF50249 cd05693 cd05703 cd05708 mobidb-lite	22
Lj2g3v3106340.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: crooked neck-like protein 1-like [Cicer arietinum] gi\|502115405\|ref\|XP_004495196.1\|	Domains G3DSA:1.25.40.10 IPR003107 IPR008847 IPR011990 IPR013026 PF05843 PS50293 PTHR11246 PTHR11246:SF14 SM00386 SSF48452 mobidb-lite	12
LotjaGi2g1v0090100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cleavage stimulation factor subunit 3; TAIR: AT1G17760.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp\|Q8GUP1\|CTF77_ARATH Cleavage stimulation factor subunit 77; TrEMBL-Plants: tr\|V7C004\|V7C004_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0090100	Domains G3DSA:1.25.40.1040 IPR003107 IPR008847 IPR011990 IPR013026 IPR019734 PF05843 PS50005 PS50293 PTHR19980 SM00386 SSF48452 mobidb-lite	13
LotjaGi5g1v0113300.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Polyribonucleotide nucleotidyltransferase; TAIR: AT3G11964.2 RIBOSOMAL RNA PROCESSING 5; Swiss-Prot: sp\|F4J8K6\|RRP5_ARATH rRNA biogenesis protein RRP5; TrEMBL-Plants: tr\|I1JFV5\|I1JFV5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0113300	Domains Coil G3DSA:1.25.40.10 G3DSA:2.40.50.140 IPR003029 IPR003107 IPR008847 IPR011990 IPR012340 IPR022967 PF00575 PF05843 PS50126 PTHR23270 SM00316 SM00386 SSF48452 SSF50249 cd05693 cd05703 cd05708 mobidb-lite	21

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	20.00