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| Field | Value |
|---|---|
| Gene ID | Lj2g3v3222880 |
| Transcript ID | Lj2g3v3222880.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PHD finger protein [Medicago truncatula] gi|357494725|ref|XP_003617651.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 50 | 50 | – | – | |
| PANTHER | 343 | 488 | 146 | 5.40E-14 | – | |
| PANTHER | 343 | 488 | 146 | 5.40E-14 | – | |
| SUPERFAMILY | 391 | 454 | 64 | 3.10E-12 | ||
| Gene3D | 394 | 449 | 56 | 2.90E-10 | ||
| ProSiteProfiles | 398 | 451 | 54 | 9.606 | ||
| SMART | 400 | 449 | 50 | 1.90E-06 | ||
| ProSitePatterns | 401 | 448 | 48 | – | ||
| Pfam | 401 | 448 | 48 | 4.30E-08 | ||
| MobiDBLite | 460 | 493 | 34 | – | – | |
| MobiDBLite | 508 | 530 | 23 | – | – | |
| MobiDBLite | 623 | 647 | 25 | – | – | |
| MobiDBLite | 662 | 686 | 25 | – | – | |
| MobiDBLite | 701 | 728 | 28 | – | – | |
| MobiDBLite | 765 | 807 | 43 | – | – | |
| CDD | 865 | 993 | 129 | 5.75E-13 | – | |
| ProSiteProfiles | 866 | 993 | 128 | 11.215 | ||
| Pfam | 887 | 991 | 105 | 3.20E-05 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Chromatin binding | Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase. |
Expression pattern of Lj2g3v3222880.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v3222880.1, powered by CORGI.
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