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Lj3g3v0044270.1

Overview

Field Value
Gene ID Lj3g3v0044270
Transcript ID Lj3g3v0044270.1
Lotus japonicus genome version MG20 v3.0
Description Signal recognition particle, SRP54 subunit protein [Theobroma cacao] gi|508778637|gb|EOY25893.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11564:SF5
1 437 437 8.20E-289 –
PANTHER
PTHR11564
1 437 437 8.20E-289 –
SUPERFAMILY
SSF47364
1 93 93 6.98E-21
IPR013822
SMART
SM00963
2 87 86 1.60E-11
IPR013822
TIGRFAM
TIGR01425
2 428 427 6.10E-224
IPR006325
Gene3D
G3DSA:1.20.120.140
5 90 86 1.90E-21 –
Hamap
MF_00306
6 448 443 35.024
IPR022941
Pfam
PF02881
6 83 78 2.70E-16
IPR013822
Gene3D
G3DSA:3.40.50.300
95 297 203 3.10E-70
IPR027417
SUPERFAMILY
SSF52540
96 298 203 7.01E-49
IPR027417
SMART
SM00382
100 277 178 2.50E-04
IPR003593
SMART
SM00962
101 296 196 3.70E-93
IPR000897
Pfam
PF00448
102 296 195 7.10E-78
IPR000897
ProSitePatterns
PS00300
269 282 14 –
IPR000897
SUPERFAMILY
SSF47446
298 429 132 1.96E-34
IPR004125
Gene3D
G3DSA:1.10.260.30
327 429 103 4.50E-31
IPR004125
Pfam
PF02978
328 429 102 4.30E-28
IPR004125

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of
GO:0006614
Biological process SRP-dependent cotranslational protein targeting to membrane The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane.
Subterm of
GO:0008312
Molecular function 7S RNA binding Interacting selectively and non-covalently with 7S RNA, the RNA component of the signal recognition particle (SRP).
Subterm of
GO:0048500
Cellular component Signal recognition particle A complex of protein and RNA which facilitates translocation of proteins across membranes.
Subterm of

Genome browser

LORE1 insertions 22

Expression data

Expression pattern

Expression pattern of Lj3g3v0044270.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0044270.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.