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| Field | Value |
|---|---|
| Gene ID | Lj3g3v2477640 |
| Transcript ID | Lj3g3v2477640.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | ATP-binding cassette protein [Lotus japonicus] gi|396080274|dbj|BAM33973.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 53 | 53 | – | – | |
| SUPERFAMILY | 41 | 367 | 327 | 3.27E-56 | ||
| Gene3D | 44 | 362 | 319 | 1.90E-54 | – | |
| TMHMM | 54 | 76 | 23 | – | – | |
| Phobius | 54 | 78 | 25 | – | – | |
| Pfam | 57 | 328 | 272 | 2.50E-57 | ||
| ProSiteProfiles | 58 | 345 | 288 | 45.803 | ||
| Phobius | 79 | 104 | 26 | – | – | |
| Phobius | 105 | 125 | 21 | – | – | |
| TMHMM | 105 | 127 | 23 | – | – | |
| Phobius | 126 | 180 | 55 | – | – | |
| TMHMM | 178 | 197 | 20 | – | – | |
| Phobius | 181 | 198 | 18 | – | – | |
| Phobius | 199 | 203 | 5 | – | – | |
| TMHMM | 202 | 224 | 23 | – | – | |
| Phobius | 204 | 224 | 21 | – | – | |
| Phobius | 225 | 283 | 59 | – | – | |
| TMHMM | 281 | 303 | 23 | – | – | |
| Phobius | 284 | 306 | 23 | – | – | |
| Phobius | 307 | 696 | 390 | – | – | |
| SUPERFAMILY | 370 | 618 | 249 | 1.17E-86 | ||
| ProSiteProfiles | 380 | 616 | 237 | 24.53 | ||
| CDD | 380 | 618 | 239 | 1.17E-133 | – | |
| Gene3D | 380 | 607 | 228 | 5.90E-81 | ||
| Pfam | 399 | 547 | 149 | 1.50E-33 | ||
| SMART | 407 | 593 | 187 | 5.10E-16 | ||
| PANTHER | 513 | 1263 | 751 | 0 | – | |
| PANTHER | 513 | 1263 | 751 | 0 | – | |
| ProSitePatterns | 519 | 533 | 15 | – | ||
| MobiDBLite | 622 | 648 | 27 | – | – | |
| SUPERFAMILY | 688 | 1006 | 319 | 4.05E-58 | ||
| Gene3D | 688 | 1007 | 320 | 1.40E-50 | – | |
| Phobius | 697 | 720 | 24 | – | – | |
| TMHMM | 699 | 721 | 23 | – | – | |
| Pfam | 700 | 972 | 273 | 1.40E-55 | ||
| ProSiteProfiles | 701 | 987 | 287 | 43.167 | ||
| Phobius | 721 | 740 | 20 | – | – | |
| Phobius | 741 | 763 | 23 | – | – | |
| TMHMM | 742 | 764 | 23 | – | – | |
| Phobius | 764 | 829 | 66 | – | – | |
| Phobius | 830 | 857 | 28 | – | – | |
| TMHMM | 834 | 856 | 23 | – | – | |
| Phobius | 858 | 921 | 64 | – | – | |
| Phobius | 922 | 941 | 20 | – | – | |
| TMHMM | 922 | 944 | 23 | – | – | |
| Phobius | 942 | 960 | 19 | – | – | |
| Phobius | 961 | 982 | 22 | – | – | |
| Phobius | 983 | 1267 | 285 | – | – | |
| SUPERFAMILY | 1012 | 1260 | 249 | 2.89E-89 | ||
| Gene3D | 1021 | 1253 | 233 | 2.00E-85 | ||
| CDD | 1022 | 1260 | 239 | 3.00E-131 | – | |
| ProSiteProfiles | 1022 | 1259 | 238 | 24.543 | ||
| Pfam | 1041 | 1190 | 150 | 1.00E-36 | ||
| SMART | 1049 | 1242 | 194 | 1.30E-16 | ||
| ProSitePatterns | 1162 | 1176 | 15 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. | ||
| Molecular function | ATPase activity, coupled to transmembrane movement of substances | Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj3g3v2477640.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v2477640.1, powered by CORGI.
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