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Lj3g3v3033270.1

Overview

Field Value
Gene ID Lj3g3v3033270
Transcript ID Lj3g3v3033270.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like [Glycine max] gi|356539356|ref|XP_003538164.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 24 24 – –
PANTHER
PTHR21319:SF11
26 267 242 1.20E-172 –
PANTHER
PTHR21319
26 267 242 1.20E-172 –
ProSiteProfiles
PS51266
32 108 77 25.034
IPR008913
SUPERFAMILY
SSF161219
37 110 74 1.44E-16 –
Pfam
PF05495
39 120 82 2.70E-19
IPR008913
ProSiteProfiles
PS51270
110 174 65 33.48
IPR017921
SUPERFAMILY
SSF161245
111 168 58 5.89E-18 –
Gene3D
G3DSA:3.30.40.10
172 231 60 2.90E-12
IPR013083
SUPERFAMILY
SSF57850
174 221 48 2.18E-10 –
SMART
SM00184
175 217 43 5.50E-07
IPR001841
ProSiteProfiles
PS50089
175 218 44 12.209
IPR001841
CDD
cd00162
175 221 47 1.17E-04 –
Pfam
PF13445
175 215 41 1.60E-07
IPR027370
Pfam
PF14599
222 267 46 1.20E-16 –
Gene3D
G3DSA:2.20.28.10
246 267 22 1.20E-07
IPR004039

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj3g3v3033270.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3033270.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.