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| Field | Value |
|---|---|
| Gene ID | Lj4g3v0668230 |
| Transcript ID | Lj4g3v0668230.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: peroxisome biogenesis protein 1-like [Glycine max] gi|356521604|ref|XP_003529444.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 162 | 162 | 0 | ||
| PANTHER | 1 | 162 | 162 | 0 | – | |
| SUPERFAMILY | 10 | 95 | 86 | 1.02E-06 | ||
| SUPERFAMILY | 99 | 177 | 79 | 1.37E-21 | ||
| Gene3D | 99 | 178 | 80 | 6.20E-27 | ||
| Pfam | 104 | 177 | 74 | 1.80E-24 | ||
| PANTHER | 217 | 260 | 44 | 0 | – | |
| PANTHER | 217 | 260 | 44 | 0 | ||
| PANTHER | 294 | 473 | 180 | 0 | – | |
| PANTHER | 294 | 473 | 180 | 0 | ||
| PANTHER | 550 | 1123 | 574 | 0 | – | |
| PANTHER | 550 | 1123 | 574 | 0 | ||
| SUPERFAMILY | 576 | 821 | 246 | 9.35E-33 | ||
| Gene3D | 586 | 748 | 163 | 1.70E-23 | ||
| CDD | 589 | 740 | 152 | 1.25E-12 | – | |
| SMART | 591 | 743 | 153 | 1.60E-11 | ||
| Pfam | 595 | 740 | 146 | 3.00E-16 | ||
| Gene3D | 749 | 824 | 76 | 1.20E-04 | – | |
| Gene3D | 843 | 1022 | 180 | 1.20E-53 | ||
| SUPERFAMILY | 844 | 1106 | 263 | 5.48E-57 | ||
| CDD | 851 | 1011 | 161 | 2.88E-20 | – | |
| SMART | 878 | 1014 | 137 | 2.10E-14 | ||
| Pfam | 882 | 1009 | 128 | 9.50E-38 | ||
| Gene3D | 1023 | 1099 | 77 | 1.90E-16 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Peroxisome | A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism. | ||
| Cellular component | Peroxisomal membrane | The lipid bilayer surrounding a peroxisome. | ||
| Biological process | Protein targeting to peroxisome | The process of directing proteins towards the peroxisome, usually using signals contained within the protein. | ||
| Biological process | Peroxisome organization | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a peroxisome. A peroxisome is a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules. | ||
| Molecular function | ATPase activity, coupled | Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction directly drives some other reaction, for example ion transport across a membrane. |
Expression pattern of Lj4g3v0668230.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v0668230.1, powered by CORGI.
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