Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj4g3v1427520.1

Overview

Field Value
Gene ID Lj4g3v1427520
Transcript ID Lj4g3v1427520.1
Lotus japonicus genome version MG20 v3.0
Description JOKA2 [Nicotiana tabacum] gi|337732515|gb|AEI71779.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR20930
2 202 201 8.50E-230 –
PANTHER
PTHR20930:SF0
2 202 201 8.50E-230 –
Gene3D
G3DSA:3.10.20.240
3 87 85 2.70E-15 –
SMART
SM00666
4 89 86 1.10E-07
IPR000270
SUPERFAMILY
SSF54277
4 77 74 5.89E-13 –
ProSiteProfiles
PS51745
4 84 81 12.24
IPR000270
CDD
cd06398
5 91 87 3.72E-33 –
Pfam
PF00564
6 77 72 3.30E-08
IPR000270
MobiDBLite
mobidb-lite
168 226 59 – –
PANTHER
PTHR20930:SF0
372 909 538 8.50E-230 –
PANTHER
PTHR20930
372 909 538 8.50E-230 –
SUPERFAMILY
SSF57850
478 541 64 1.00E-13 –
SMART
SM00291
488 533 46 2.20E-05
IPR000433
ProSiteProfiles
PS50135
488 535 48 11.713
IPR000433
Pfam
PF00569
489 526 38 1.80E-09
IPR000433
CDD
cd14947
567 680 114 2.18E-47
IPR032350
Pfam
PF16158
578 679 102 5.90E-31
IPR032350
ProSiteProfiles
PS50030
825 866 42 9.246
IPR015940
CDD
cd14319
826 864 39 9.18E-11 –
Gene3D
G3DSA:1.10.8.10
866 906 41 1.00E-06 –
CDD
cd14319
869 906 38 5.32E-13 –
SUPERFAMILY
SSF46934
869 906 38 7.66E-07
IPR009060

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj4g3v1427520.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v1427520.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.