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| Field | Value |
|---|---|
| Gene ID | Lj4g3v1722980 |
| Transcript ID | Lj4g3v1722980.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: ABC transporter B family member 25-like [Glycine max] gi|356513473|ref|XP_003525438.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 20 | 20 | – | – | |
| PIRSF | 1 | 543 | 543 | 9.60E-234 | – | |
| PANTHER | 8 | 541 | 534 | 0 | – | |
| PANTHER | 8 | 541 | 534 | 0 | – | |
| Gene3D | 10 | 273 | 264 | 8.40E-79 | – | |
| SUPERFAMILY | 12 | 273 | 262 | 2.75E-65 | ||
| Pfam | 14 | 241 | 228 | 4.90E-59 | ||
| TMHMM | 17 | 39 | 23 | – | – | |
| ProSiteProfiles | 21 | 260 | 240 | 52.709 | ||
| Phobius | 21 | 40 | 20 | – | – | |
| Phobius | 41 | 116 | 76 | – | – | |
| TMHMM | 109 | 131 | 23 | – | – | |
| Phobius | 117 | 136 | 20 | – | – | |
| Phobius | 137 | 196 | 60 | – | – | |
| Phobius | 197 | 225 | 29 | – | – | |
| TMHMM | 199 | 221 | 23 | – | – | |
| Phobius | 226 | 236 | 11 | – | – | |
| TMHMM | 236 | 258 | 23 | – | – | |
| Phobius | 237 | 258 | 22 | – | – | |
| Phobius | 259 | 543 | 285 | – | – | |
| SUPERFAMILY | 287 | 532 | 246 | 7.39E-89 | ||
| ProSiteProfiles | 294 | 531 | 238 | 26.391 | ||
| Gene3D | 294 | 526 | 233 | 2.50E-83 | ||
| CDD | 294 | 532 | 239 | 3.00E-131 | – | |
| Pfam | 312 | 462 | 151 | 2.10E-34 | ||
| SMART | 321 | 514 | 194 | 4.10E-14 | ||
| ProSitePatterns | 434 | 448 | 15 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. | ||
| Molecular function | ATPase activity, coupled to transmembrane movement of substances | Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj4g3v1722980.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v1722980.2, powered by CORGI.
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