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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2172560 |
| Transcript ID | Lj4g3v2172560.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: DNA repair protein recA homolog 3, mitochondrial-like isoform X4 [Cicer arietinum] gi|502150423|ref|XP_004507946.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 2 | 2 | – | – | |
| ProSiteProfiles | 1 | 118 | 118 | 17.192 | ||
| SignalP | 1 | 18 | 18 | – | – | |
| Phobius | 1 | 18 | 18 | – | – | |
| Phobius | 3 | 13 | 11 | – | – | |
| SUPERFAMILY | 5 | 194 | 190 | 3.44E-31 | ||
| Pfam | 9 | 195 | 187 | 6.50E-81 | ||
| TIGRFAM | 10 | 250 | 241 | 5.90E-98 | ||
| PANTHER | 11 | 261 | 251 | 7.50E-146 | ||
| Gene3D | 11 | 194 | 184 | 1.60E-41 | ||
| PANTHER | 11 | 261 | 251 | 7.50E-146 | – | |
| Phobius | 14 | 18 | 5 | – | – | |
| PRINTS | 17 | 46 | 30 | 6.10E-76 | ||
| Phobius | 19 | 288 | 270 | – | – | |
| PRINTS | 51 | 80 | 30 | 6.10E-76 | ||
| PRINTS | 89 | 118 | 30 | 6.10E-76 | ||
| ProSiteProfiles | 128 | 199 | 72 | 27.169 | ||
| PRINTS | 137 | 165 | 29 | 6.10E-76 | ||
| ProSitePatterns | 140 | 148 | 9 | – | ||
| PRINTS | 170 | 199 | 30 | 6.10E-76 | ||
| SUPERFAMILY | 196 | 251 | 56 | 2.35E-08 | ||
| Gene3D | 197 | 252 | 56 | 2.20E-12 | ||
| PRINTS | 223 | 240 | 18 | 6.10E-76 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Single-stranded DNA binding | Interacting selectively and non-covalently with single-stranded DNA. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | DNA metabolic process | Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | ||
| Molecular function | DNA-dependent ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of single- or double-stranded DNA, and it drives another reaction. |
Expression pattern of Lj4g3v2172560.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2172560.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.