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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2227820 |
| Transcript ID | Lj4g3v2227820.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | ABC transporter B family member [Medicago truncatula] gi|357479199|ref|XP_003609885.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 17 | 17 | – | – | |
| PANTHER | 1 | 512 | 512 | 0 | – | |
| ProSiteProfiles | 1 | 264 | 264 | 44.694 | ||
| PANTHER | 1 | 512 | 512 | 0 | – | |
| Pfam | 14 | 247 | 234 | 5.00E-59 | ||
| Gene3D | 14 | 284 | 271 | 1.30E-52 | – | |
| SUPERFAMILY | 16 | 283 | 268 | 5.36E-57 | ||
| Phobius | 18 | 41 | 24 | – | – | |
| TMHMM | 19 | 41 | 23 | – | – | |
| Phobius | 42 | 95 | 54 | – | – | |
| Phobius | 96 | 115 | 20 | – | – | |
| TMHMM | 111 | 133 | 23 | – | – | |
| Phobius | 116 | 120 | 5 | – | – | |
| Phobius | 121 | 138 | 18 | – | – | |
| Phobius | 139 | 593 | 455 | – | – | |
| SUPERFAMILY | 288 | 514 | 227 | 2.05E-83 | ||
| Gene3D | 298 | 513 | 216 | 2.90E-81 | ||
| ProSiteProfiles | 299 | 536 | 238 | 22.322 | ||
| CDD | 299 | 512 | 214 | 1.19E-125 | – | |
| Pfam | 320 | 467 | 148 | 6.80E-36 | ||
| SMART | 326 | 513 | 188 | 3.20E-14 | ||
| ProSitePatterns | 439 | 453 | 15 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. | ||
| Molecular function | ATPase activity, coupled to transmembrane movement of substances | Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj4g3v2227820.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2227820.1, powered by CORGI.
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