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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2227830 |
| Transcript ID | Lj4g3v2227830.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | ABC transporter B family member [Medicago truncatula] gi|357479199|ref|XP_003609885.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 1 | 169 | 169 | 1.20E-36 | ||
| ProSiteProfiles | 1 | 183 | 183 | 32.894 | ||
| Gene3D | 1 | 200 | 200 | 5.60E-33 | – | |
| PANTHER | 1 | 460 | 460 | 2.20E-235 | – | |
| SUPERFAMILY | 1 | 202 | 202 | 2.75E-37 | ||
| Phobius | 1 | 15 | 15 | – | – | |
| PANTHER | 1 | 460 | 460 | 2.20E-235 | – | |
| TMHMM | 16 | 35 | 20 | – | – | |
| Phobius | 16 | 35 | 20 | – | – | |
| Phobius | 36 | 41 | 6 | – | – | |
| TMHMM | 40 | 62 | 23 | – | – | |
| Phobius | 42 | 62 | 21 | – | – | |
| Phobius | 63 | 118 | 56 | – | – | |
| Phobius | 119 | 142 | 24 | – | – | |
| TMHMM | 119 | 141 | 23 | – | – | |
| Phobius | 143 | 153 | 11 | – | – | |
| Phobius | 154 | 172 | 19 | – | – | |
| Phobius | 173 | 460 | 288 | – | – | |
| SUPERFAMILY | 210 | 456 | 247 | 7.14E-89 | ||
| ProSiteProfiles | 218 | 454 | 237 | 24.39 | ||
| Gene3D | 218 | 449 | 232 | 6.50E-86 | ||
| CDD | 218 | 456 | 239 | 1.78E-138 | – | |
| Pfam | 237 | 385 | 149 | 4.30E-34 | ||
| SMART | 245 | 417 | 173 | 3.20E-14 | ||
| ProSitePatterns | 357 | 371 | 15 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. | ||
| Molecular function | ATPase activity, coupled to transmembrane movement of substances | Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj4g3v2227830.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2227830.1, powered by CORGI.
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