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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2526040 |
| Transcript ID | Lj4g3v2526040.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: ATP-dependent DNA helicase Q-like 5-like isoform X1 [Cicer arietinum] gi|502141185|ref|XP_004504477.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 155 | 155 | – | – | |
| MobiDBLite | 40 | 81 | 42 | – | – | |
| PANTHER | 94 | 758 | 665 | 1.70E-286 | – | |
| PANTHER | 94 | 758 | 665 | 1.70E-286 | – | |
| Gene3D | 107 | 302 | 196 | 4.30E-42 | ||
| TIGRFAM | 113 | 460 | 348 | 2.50E-105 | ||
| SMART | 119 | 315 | 197 | 2.00E-23 | ||
| Pfam | 126 | 287 | 162 | 1.10E-17 | ||
| ProSiteProfiles | 131 | 301 | 171 | 22.348 | ||
| CDD | 138 | 271 | 134 | 4.55E-13 | – | |
| Phobius | 156 | 176 | 21 | – | – | |
| SUPERFAMILY | 163 | 451 | 289 | 9.69E-51 | ||
| Phobius | 177 | 760 | 584 | – | – | |
| ProSitePatterns | 238 | 247 | 10 | – | ||
| CDD | 320 | 441 | 122 | 1.57E-27 | – | |
| ProSiteProfiles | 322 | 472 | 151 | 18.685 | ||
| Gene3D | 324 | 445 | 122 | 2.50E-33 | ||
| Pfam | 338 | 432 | 95 | 2.80E-16 | ||
| SMART | 352 | 433 | 82 | 1.80E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Helicase activity | Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | DNA recombination | Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Interchromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction. |
Expression pattern of Lj4g3v2526040.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2526040.1, powered by CORGI.
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