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| Field | Value |
|---|---|
| Gene ID | Lj4g3v2628750 |
| Transcript ID | Lj4g3v2628750.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: exonuclease 1-like [Cicer arietinum] gi|502140539|ref|XP_004504251.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 195 | 195 | 8.00E-55 | ||
| CDD | 1 | 206 | 206 | 7.54E-117 | – | |
| SMART | 1 | 99 | 99 | 1.10E-30 | ||
| Pfam | 1 | 98 | 98 | 4.40E-23 | ||
| PANTHER | 2 | 459 | 458 | 3.00E-182 | ||
| SUPERFAMILY | 2 | 226 | 225 | 1.50E-61 | ||
| PANTHER | 2 | 459 | 458 | 3.00E-182 | ||
| PRINTS | 24 | 38 | 15 | 3.40E-29 | ||
| ProSitePatterns | 71 | 85 | 15 | – | ||
| PRINTS | 73 | 92 | 20 | 3.40E-29 | ||
| PRINTS | 137 | 154 | 18 | 3.40E-29 | ||
| SMART | 138 | 208 | 71 | 6.90E-18 | ||
| Pfam | 140 | 226 | 87 | 2.00E-22 | ||
| PRINTS | 158 | 178 | 21 | 3.40E-29 | ||
| SUPERFAMILY | 211 | 333 | 123 | 1.64E-23 | ||
| Gene3D | 212 | 256 | 45 | 2.40E-08 | – | |
| SMART | 213 | 246 | 34 | 1.30E-05 | ||
| CDD | 214 | 285 | 72 | 1.38E-34 | – | |
| PRINTS | 216 | 231 | 16 | 3.40E-29 | ||
| MobiDBLite | 414 | 445 | 32 | – | – | |
| MobiDBLite | 460 | 483 | 24 | – | – | |
| MobiDBLite | 566 | 606 | 41 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Nuclease activity | Catalysis of the hydrolysis of ester linkages within nucleic acids. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | ||
| Molecular function | Hydrolase activity, acting on ester bonds | Catalysis of the hydrolysis of any ester bond. | ||
| Molecular function | 5'-3' exodeoxyribonuclease activity | Catalysis of the sequential cleavage of mononucleotides from a free 5' terminus of a DNA molecule. |
Expression pattern of Lj4g3v2628750.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v2628750.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.