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PIRSF005198

Source: PIRSF

Description

No description is available for this domain.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0003724
Molecular function RNA helicase activity Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a RNA helix.
Subterm of
GO:0006401
Biological process RNA catabolic process The chemical reactions and pathways resulting in the breakdown of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage.
Subterm of

Associated Lotus transcripts 7

Transcript Name Description Predicted domains Domain count
Lj1g3v3329390.1
– PREDICTED: superkiller viralicidic activity 2-like 2-like [Glycine max] gi|356527455|ref|XP_003532326.1|
Domains
23
Lj6g3v0622070.1
– PREDICTED: helicase SKI2W-like [Glycine max] gi|356569566|ref|XP_003552970.1|
Domains
21
LotjaGi1g1v0553600.2
– ATP-dependent RNA helicase family protein; TAIR: AT1G59760.1 RNA helicase, ATP-dependent, SK12/DOB1 protein; Swiss-Prot: sp|Q9XIF2|MTR4_ARATH DExH-box ATP-dependent RNA helicase DExH9; TrEMBL-Plants: tr|V7AZU7|V7AZU7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0553600
Domains
28
LotjaGi4g1v0439700.1
– ATP-dependent RNA helicase family protein; TAIR: AT2G06990.1 RNA helicase, ATP-dependent, SK12/DOB1 protein; Swiss-Prot: sp|Q9ZVW2|HEN2_ARATH DExH-box ATP-dependent RNA helicase DExH10; TrEMBL-Plants: tr|I1KPQ5|I1KPQ5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0439700
Domains
29
LotjaGi4g1v0439700.2
– ATP-dependent RNA helicase family protein; TAIR: AT2G06990.1 RNA helicase, ATP-dependent, SK12/DOB1 protein; Swiss-Prot: sp|Q9ZVW2|HEN2_ARATH DExH-box ATP-dependent RNA helicase DExH10; TrEMBL-Plants: tr|I1KPQ5|I1KPQ5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0439700
Domains
29
LotjaGi6g1v0134200.1
– ATP-dependent RNA helicase family protein; TAIR: AT3G46960.2 RNA helicase, ATP-dependent, SK12/DOB1 protein; Swiss-Prot: sp|F4JAA5|SKI2_ARATH DExH-box ATP-dependent RNA helicase DExH11; TrEMBL-Plants: tr|I1N032|I1N032_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0134200
Domains
28
LotjaGi6g1v0134200.2
– ATP-dependent RNA helicase family protein; TAIR: AT3G46960.1 RNA helicase, ATP-dependent, SK12/DOB1 protein; Swiss-Prot: sp|F4JAA5|SKI2_ARATH DExH-box ATP-dependent RNA helicase DExH11; TrEMBL-Plants: tr|I1N032|I1N032_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0134200
Domains
28

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 14.29