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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1382270 |
| Transcript ID | Lj6g3v1382270.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | ATP-dependent zinc metalloprotease FTSH 8, chloroplastic-like [Glycine max] gi|359806106|ref|NP_001241188.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 1 | 1 | – | – | |
| Phobius | 1 | 15 | 15 | – | – | |
| Phobius | 2 | 10 | 9 | – | – | |
| PANTHER | 7 | 682 | 676 | 0 | – | |
| PANTHER | 7 | 682 | 676 | 0 | – | |
| Phobius | 11 | 15 | 5 | – | – | |
| Phobius | 16 | 169 | 154 | – | – | |
| Hamap | 31 | 680 | 650 | 35.454 | ||
| TMHMM | 169 | 191 | 23 | – | – | |
| Phobius | 170 | 191 | 22 | – | – | |
| TIGRFAM | 174 | 669 | 496 | 1.60E-213 | ||
| Phobius | 192 | 691 | 500 | – | – | |
| SUPERFAMILY | 223 | 468 | 246 | 3.12E-70 | ||
| Gene3D | 226 | 406 | 181 | 1.20E-63 | ||
| CDD | 240 | 397 | 158 | 3.55E-27 | – | |
| SMART | 261 | 400 | 140 | 3.30E-24 | ||
| Pfam | 265 | 396 | 132 | 6.10E-45 | ||
| ProSitePatterns | 368 | 386 | 19 | – | ||
| Gene3D | 407 | 473 | 67 | 7.80E-24 | – | |
| Pfam | 459 | 667 | 209 | 3.50E-74 | ||
| SUPERFAMILY | 480 | 676 | 197 | 2.49E-64 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Metalloendopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of Lj6g3v1382270.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1382270.1, powered by CORGI.
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