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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1445620 |
| Transcript ID | Lj6g3v1445620.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: isoleucine--tRNA ligase-like [Cicer arietinum] gi|502085158|ref|XP_004487851.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 62 | 105 | 44 | – | – | |
| Hamap | 104 | 1084 | 981 | 19.219 | ||
| SUPERFAMILY | 105 | 304 | 200 | 1.97E-133 | – | |
| PANTHER | 108 | 360 | 253 | 0 | – | |
| PANTHER | 108 | 360 | 253 | 0 | – | |
| Gene3D | 116 | 302 | 187 | 1.70E-137 | ||
| TIGRFAM | 117 | 984 | 868 | 1.70E-271 | ||
| Pfam | 130 | 774 | 645 | 4.00E-178 | ||
| PRINTS | 152 | 163 | 12 | 6.50E-30 | ||
| ProSitePatterns | 159 | 170 | 12 | – | ||
| SUPERFAMILY | 309 | 529 | 221 | 7.85E-46 | ||
| PRINTS | 339 | 362 | 24 | 6.50E-30 | ||
| Gene3D | 340 | 531 | 192 | 2.50E-53 | ||
| PANTHER | 408 | 1017 | 610 | 0 | – | |
| PANTHER | 408 | 1017 | 610 | 0 | – | |
| PRINTS | 527 | 542 | 16 | 6.50E-30 | ||
| SUPERFAMILY | 529 | 782 | 254 | 1.97E-133 | – | |
| Gene3D | 532 | 772 | 241 | 1.70E-137 | ||
| CDD | 538 | 775 | 238 | 7.02E-85 | – | |
| PRINTS | 653 | 666 | 14 | 6.50E-30 | ||
| PRINTS | 687 | 696 | 10 | 6.50E-30 | ||
| CDD | 775 | 961 | 187 | 8.15E-75 | ||
| Gene3D | 778 | 968 | 191 | 9.60E-35 | ||
| SUPERFAMILY | 787 | 1083 | 297 | 1.85E-62 | ||
| Pfam | 819 | 983 | 165 | 5.40E-27 | ||
| Pfam | 1053 | 1082 | 30 | 2.30E-06 | ||
| PANTHER | 1066 | 1089 | 24 | 0 | – | |
| PANTHER | 1066 | 1089 | 24 | 0 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | TRNA binding | Interacting selectively and non-covalently with transfer RNA. | ||
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Aminoacyl-tRNA editing activity | The hydrolysis of an incorrectly aminoacylated tRNA. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | Isoleucine-tRNA ligase activity | Catalysis of the reaction: L-isoleucine + ATP + tRNA(Ile) = L-isoleucyl-tRNA(Ile) + AMP + diphosphate + 2 H(+). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | TRNA aminoacylation for protein translation | The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis. | ||
| Biological process | Isoleucyl-tRNA aminoacylation | The process of coupling isoleucine to isoleucyl-tRNA, catalyzed by isoleucyl-tRNA synthetase. The isoleucyl-tRNA synthetase is a class-I synthetase. The activated amino acid is transferred to the 2'-OH group of a isoleucine-accetping tRNA. The 2'-O-aminoacyl-tRNA will ultimately migrate to the 3' position via transesterification. |
Expression pattern of Lj6g3v1445620.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1445620.1, powered by CORGI.
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