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| Field | Value |
|---|---|
| Gene ID | Lj6g3v1984610 |
| Transcript ID | Lj6g3v1984610.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: U4/U6.U5 tri-snRNP-associated protein 2-like [Glycine max] gi|356534252|ref|XP_003535671.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 94 | 94 | – | – | |
| Coils | 13 | 33 | 21 | – | – | |
| Gene3D | 102 | 200 | 99 | 6.20E-15 | ||
| SUPERFAMILY | 102 | 196 | 95 | 2.59E-24 | – | |
| CDD | 105 | 627 | 523 | 0 | ||
| ProSiteProfiles | 121 | 182 | 62 | 18.266 | ||
| SMART | 122 | 171 | 50 | 3.90E-18 | ||
| Pfam | 123 | 184 | 62 | 2.00E-14 | ||
| PANTHER | 165 | 326 | 162 | 2.00E-65 | ||
| PANTHER | 165 | 326 | 162 | 2.00E-65 | – | |
| SUPERFAMILY | 216 | 348 | 133 | 1.53E-25 | – | |
| Pfam | 224 | 345 | 122 | 4.20E-16 | ||
| ProSiteProfiles | 224 | 629 | 406 | 31.391 | ||
| SUPERFAMILY | 371 | 628 | 258 | 1.12E-37 | – | |
| Pfam | 372 | 626 | 255 | 1.40E-23 | ||
| PANTHER | 403 | 629 | 227 | 2.00E-65 | – | |
| PANTHER | 403 | 629 | 227 | 2.00E-65 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Spliceosomal complex assembly | The aggregation, arrangement and bonding together of a spliceosomal complex, a ribonucleoprotein apparatus that catalyzes nuclear mRNA splicing via transesterification reactions. | ||
| Biological process | MRNA processing | Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Biological process | Protein deubiquitination | The removal of one or more ubiquitin groups from a protein. | ||
| Molecular function | Thiol-dependent ubiquitinyl hydrolase activity | Catalysis of the thiol-dependent hydrolysis of an ester, thioester, amide, peptide or isopeptide bond formed by the C-terminal glycine of ubiquitin. |
Expression pattern of Lj6g3v1984610.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj6g3v1984610.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.