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LotjaGi1g1v0010900.7

Overview

Field Value
Gene ID LotjaGi1g1v0010900
Transcript ID LotjaGi1g1v0010900.7
Related isoforms 6
Lotus japonicus genome version Gifu v1.2
Description Neutral ceramidase; TAIR: AT1G07380.1 Neutral/alkaline non-lysosomal ceramidase; Swiss-Prot: sp|Q304B9|NCASE_ARATH Neutral ceramidase; TrEMBL-Plants: tr|G7K4V4|G7K4V4_MEDTR Neutral/alkaline non-lysosomal ceramidase; Found in the gene: LotjaGi1g1v0010900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:1340452..1346172) extracted from Lotus japonicus Gifu genome v1.2.

CTTAGGTTGATGGAGTTACCTTCCCTCTCTCATTGGAGGGCAACTGCAACTATGAGAGTTTGGCCTTTTTTCTTGCTCCT GATTCTACTGAAGAGTGATGTTGTATATTCAGATTCTAATTACTTGATTGGTCTTGGAAGCTATGACATCACTGGTCCTG CAGCTGATGTTAACATGATGGGGTATACTAACACAGAACAAATTGCTTCTGGGGTTCACTTCAGGCTGCGGGCTCGTACT TTTATTGCTGCTGAGCCCAAGGGTAACCGGGCAGCGTTTGTGAACCTCGATGCTTGCATGGCTTCAGATCTTATCACCAC CAAAGTATTTGAGAGGCTGAAAGCAAGGTACCAATAATAACCGGGGTTGTTCCCCAGAAATTGCTGTGATAATTACTTGC AGAAATTATGGTAGATTGATTATGATTTTCTTTAATGTCTGCTAGTGAGGGCTGATGACTTGAATTAACAAAAATGTTTT GTAGACAACACCCTAATAAAAAAGAGAGAAAGGAAGAGACTAGAGAGAAACGGTAGATCTGATATATGATGTGATGGGAA GGAGATAAAAAGAAAAATGAGATGTATGTGAGGCGTCGATACTGTGGCATGTTTAAAAATCAGGATTGTTGATTTAGATT ACTAATCTCAAAGTTATGTGCCTGAAGTCATACTTTAATTTGTTTGACAGATATGGTGACCTATATACGGAAAAGAATGT AGCTATTAGTGGAACTCATACTCATGCTGGTCCTGGGGGTTTTCTCCAGTATGTTACGTATCTTGTAACATCGCTCGGAT TTGTTCGCCAGTCATTTGATGTCATTGTTGATGGCATTGAGAAAAGCATCATTCAGGCTCATGAAAATCTCCGCCCAGGA TCAATATTTGTCAATAAAGGTAAGGAAAGACTTGGCATTCATTTTCCTTGAGTGATGGGAGTTCTGCATACTGTTGAAGA GGTCAGAAAAGGATAAAAATCTATAGGAAGCAAGTTGCTTATTCTTTTTTCCTTGAGTTCAGTTGTTTGAAGTATCTGTA TCAAATTGTTTACATTTTACTATAACCTTTGTTAAAGAGATGAAAAAATAAGGAAATTTTACTGGGTGGAAGTGGCACAT GTTCAACACTAAAACCATATAAATAAATAAAAAACTGGTGCAACAATCTTGAGTCCCACATGATTAATGAGCAGTGCTAT CAAATATCCACCACGGCGGAATCTCATGGCGGGTTTTTAGCTCTCCGCCATGTCCGATATCCGCCATCATTATTTGTCAA AAACGGCAGGTTTTTGGCTCTCTGACATAGTCCGCTATCCGCCATTTACAACAATGTTAATGAGATAACTTCTTTGGAAA GAAAAAGAAAAGAAAAGAAAACTGTCAATTTATATCATCGCTTGTATCATAAGTCATAACTGAGGCACCCTGGAAAAGAA AAAGACAAGGAAAAAGGATGTAATATGAGGTTTAAATAATAAGTAACGTGTGTTGATAAGGCAACGGTAACTACAACATC CATTGATAAGTTAAAGGCAAAAAACTTAGAAGAACCTTGAATAAGGCACACTTCTAGCTTTCCCTCCATTATTTTTTTTG TTCTATTTCCTAGAGACATTGGTAACTGTAGTGAAAATATGGTTATCATTATTTTTGAGCTGTTAGTGTGATTGCTAGCA AGTGCACAAGCAGGTAGGAAATGGGTGTTCTGTTATATAAACTTTCTCCCTTCTTTCGGCGATATCAGATGGTTACAAAT GTGTTATCTTCAACTTGCAGGAGAGCTTTTAGATGCTGGTGTAAATCGCAGCCCTAGTGCTTATCTCAATAATCCTGCTG CAGAAAGAAGCAAATATAAGTACAATGTTGATAAAGAAATGACTCTTTTAAAGTTTGTTGATGATGAATGGGGTCCTTCA GGAAGCTTCAATTGGTTTGCTACTCATGGGACTTCAATGAGTCGTACAAACTCGTTAATTAGTGGCGATAATAAGGGTGC TGCTGCACGATTTATGGAAGATTGGTTTGAGAAAAAAGGCTCTGCTGGATTTGAAAATGATGGCTTACCCCGAAGAATTT CCAACATAATTCCCAGTCTTCATGCTAATCGTAAGTTTTTTTCTTTTCTTTTTTTAATGTTGTACGTCAATTGATAACAT TATTAGCTTCTTTCCATTATACATTGAAGAGACAAAATAAATATGTCCATTTAATACCTTCAGAATTTGTAGGTTTATAT GCCACACTCTGAAATCCTTGATGCTGCTGTAATTGATTGGATTCGAACTGTGTTCTGAAATGGTTTCGGTGATTAACTAG TCATAAATAAATATTACTACGTTAGTAACTAAGCATGTGGCAATGCATGCATGCATGTGTGTTTGTGCGTGTTCATATTC ATATTTGAATGCTTAAGACTTTAATTATGCTCCTTTTTGGTAGCTGGTAAGTAGCGAATATTTAATTCTTAAGCATATAC TGATACTGATCATCACTTGCATATCATATCTCCAATCTTGCTCACATAGTTGCACATTTAGTTTATTCAAATGTCTCTTT TGGGGTAAGAGAAGCAGTGTGGCCGAATTATTCTTATGTGGTGATACATTTTGAACGTATAATATCCATCTATTTCTCTT GGTTCCATTTCGAGTGCGCATCAACATCCGCCAAATTTATTCTATTGTACATGTGCTGGATTGCATAGTCTAGTAGAACG ACTTCTCATTTCTGATATGATGCTTTTAAGTTTTACAAGTTCTTTCCTGATAAATGTCCCAATATTGGTCAAATCCAATG GAATTGTCTGCACACAAGACAAGAAGTAAATATTCTAGCAATGGCTGGTTGAGCTGTCTTGTGAAACATACGTGAATTAT ACCTTGCTTTCTATAAGGGATGTAATTTGATCATCATTAAGGCGAGATATCAGATGATAATAATTAATAAATGAAATATA TGTCCAATCTCACTTAAAATTTGTTGGTGCAGACCATGAATTACTGGAACTTGCCGCCTCATTCCAATCTCCTCCTGGTA GACCAGCAACCAGAACTTCAAGTGTTGCTAGACGAGTGAGGGGTGTCCTTAAGCAGGTTGACAAGCCTAGATTTGTTTCT GCATTTTGTCAATCAAATTGTGGTGATGTCAGTCCAAATACACTCGGAGCTTTTTGTTTAGACACTGGACTACCTTGTGA CTTCAATCACAGTACATGTGGAGGGAAAAATGAATTATGCTACGGCCGAGGACCTGGGTAATTATTTATTGCACACTCGC TTATTTCTCCAGTTTTTGCAAATTTACCTATGCTTATGTGATTACTAATTTCCTCCTATAAGTGATATGGCAGTTACCCA GATGAATTTGAAAGTACGCATACTATAGGGGAGAGGCAATTTAGAAAAGCAGTGGAGCTATTCAATGGAGCATCTGAACA GGTTAAAGGAAAGGTTGATTTTCGACATGCCTACATAGATTTCTCCCAGCTCGAGGTAAATCTTTCTAGTGCAGGAGCTT TTAAGGGAGCAAAGACATGTCCTGCTGCCCTGGGATTTGCACTTGCTGCTGGAACAACAGATGGGCCAGGAGCTTTTGAT TTTAAGCAAGGTGATGTTAAGGTAACCACTGATTCTATACCTTATGCTTATCCATGATCATTGGCCTGTATACTTAAATA TCTTTCAAATTCTATGCTTACTGTTTTTTCTAATTGTCTCAGGGAAATCCTTTCTGGAACACGGTTCGCAACTTACTTAA AAAGCCAGGCAAGGAACAAATAGACTGTCAGTACCCAAAGCCCATTTTGCTTGATATCGGTGAAATGAAGATACCATATG ATTGGGCAGTAAGTTCCCCATTAACCCTTTTATGTTGAATATCATGTCTTTATGGTCTCCTGGCTCAGTTCAGCTATGTT CTCTGTGTTGATTTATTTGGAAGATAGATGGAAGGTTGACAGCATAGAAACTGGTTTTAGCATATTATTTACTTTGCTCA GAGCTTGGCATAACTTGACTGCTGTTCTTGGCATGTCCACTTTAGTTCCTTTAATAAATTACGTAATCTCAATAAAAGAT AATTACGTCTCTTATACATTTTCTTTTCTTTGGATAGAAGTCCTAGTATGCATTCTCCAGTTATTATGGCATACATTTTC CAAGACCTGATTCGATGTTCTTTGGTGGCCTCCATTTGTCTTTGCCCATCTATTTTCTGCCATACAGTTCTAATTTCTGA CAACTTCTACTTAATCAGCTTTCGTCCTTTGTCTCATTTGCAGCCTTCAATACTTCCAATCCAGATTCTTCGAATTGGGC AGTTTGTTATTCTTAGTGTACCAGGAGGTATGATCCCTTACTCTTAATTTCTTCTAAGATGTTTTGCTGTTGTAATTTTA TCCTTTGCATTTTGAAACGTTAAGTTTCAACTATCAATGAACTTAGTTTAATGAGGAGTAATATATAACTGTATTATCAA AAAGCAAACATTCCTAGTTGTTGAATATCTTTGAGCTTAAAAGAACAAAAATACGCTGAAGTGTTACTGATGTCATGATA TTTTGGTGATTTCGATTCTGGAAGTCTGGAACTACTGGAAATTTGAATCTTCACTTTTTTATGTGTGTCAAAATAAATAT TCTAAGACCTAATGTACTCCATACGTCTTGGTCATATGTTACTGTGATATTATGGTATACGGTTGTTGTTCTTTTCCTTG GAAATTCATGTTTACACTATGTGTGCAATTATTTGGTAGACAATCTCATTTGGCCTATGTATTTATTTGGGTGCTTCATG CTTGTTGCTATTACTTTAATTCTGGCAGAATTTACAACAATGGCTGGGAGGCGTCTACGTGATGCGGTGAAGGAAGTACT TAGTGCTGACAAAGACTTTGGTAGAAACATTCATGTTGTGCTAGCAGGGTTGACTAATACTTATTCACAGTATGTGACTA CATATGAAGAGTACGAGGTGCAAAGATATGAGGTCAGTTAACTCTTATATTTATCACTCTCAAGTTTTTTATAACGCCTC TTCCAATTAGTCAGAGTATTGATTTTGCTTAGTGTGTTGAATTTCCGCCCCTTGCACATTTTTTCTGTCTCCCTCCCTCA TGATGACAATGCGGTAACCATTATGGGCAACCATTTTTGTTGTTGTCAGGGTGCTTCGACGCTCTATGGTCCACACACAC TGAGCGCATACATTCAGGAGTTTAAGAAGCTCGCGAACGCTCTCATCAGTGGCCAGCCTGTAGAACCAGGGCCACAACCC CCTGACCTCCTGAACAAGCAAATAAGCTTCTTAACACCGGTTGTGATGGATGGAACCCCTATTGGTGTACAGTTTGGGGA CTGCAGCTCTGACGTACCGAAGAACGCCACCTTTAAGAAAGGTGACATGGTGTCGGTTACATTCTGGTCCGCATGCCCTC GCAATGACCTTATGACTGAAGGCACATTCTCCTTGGTTGAATTTCTCCAAGGAAAGGATACTTGGGTTCCTGCTTATGAT GATGATGATTTCTGCTTGCGCTTCAAGTGGTCTAGGCCTTTTAAACTCAGTACTCACAGTAAAGCCACCATAGAATGGAG AATCCCACAAGATGCAGCTCCTGGTGTATACAGAATAAAGCATTTTGGTGCTGCAAAGGGCTTATTAGGATCAATTCATC ACTTCACAGGCTCATGTAGTGCATTTGTAGTAACACAGTAG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0010900.7) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGTTACCTTCCCTCTCTCATTGGAGGGCAACTGCAACTATGAGAGTTTGGCCTTTTTTCTTGCTCCTGATTCTACT GAAGAGTGATGTTGTATATTCAGATTCTAATTACTTGATTGGTCTTGGAAGCTATGACATCACTGGTCCTGCAGCTGATG TTAACATGATGGGGTATACTAACACAGAACAAATTGCTTCTGGGGTTCACTTCAGGCTGCGGGCTCGTACTTTTATTGCT GCTGAGCCCAAGGGTAACCGGGCAGCGTTTGTGAACCTCGATGCTTGCATGGCTTCAGATCTTATCACCACCAAAGTATT TGAGAGGCTGAAAGCAAGATATGGTGACCTATATACGGAAAAGAATGTAGCTATTAGTGGAACTCATACTCATGCTGGTC CTGGGGGTTTTCTCCAGTATGTTACGTATCTTGTAACATCGCTCGGATTTGTTCGCCAGTCATTTGATGTCATTGTTGAT GGCATTGAGAAAAGCATCATTCAGGCTCATGAAAATCTCCGCCCAGGATCAATATTTGTCAATAAAGGAGAGCTTTTAGA TGCTGGTGTAAATCGCAGCCCTAGTGCTTATCTCAATAATCCTGCTGCAGAAAGAAGCAAATATAAGTACAATGTTGATA AAGAAATGACTCTTTTAAAGTTTGTTGATGATGAATGGGGTCCTTCAGGAAGCTTCAATTGGTTTGCTACTCATGGGACT TCAATGAGTCGTACAAACTCGTTAATTAGTGGCGATAATAAGGGTGCTGCTGCACGATTTATGGAAGATTGGTTTGAGAA AAAAGGCTCTGCTGGATTTGAAAATGATGGCTTACCCCGAAGAATTTCCAACATAATTCCCAGTCTTCATGCTAATCACC ATGAATTACTGGAACTTGCCGCCTCATTCCAATCTCCTCCTGGTAGACCAGCAACCAGAACTTCAAGTGTTGCTAGACGA GTGAGGGGTGTCCTTAAGCAGGTTGACAAGCCTAGATTTGTTTCTGCATTTTGTCAATCAAATTGTGGTGATGTCAGTCC AAATACACTCGGAGCTTTTTGTTTAGACACTGGACTACCTTGTGACTTCAATCACAGTACATGTGGAGGGAAAAATGAAT TATGCTACGGCCGAGGACCTGGTTACCCAGATGAATTTGAAAGTACGCATACTATAGGGGAGAGGCAATTTAGAAAAGCA GTGGAGCTATTCAATGGAGCATCTGAACAGGTTAAAGGAAAGGTTGATTTTCGACATGCCTACATAGATTTCTCCCAGCT CGAGGTAAATCTTTCTAGTGCAGGAGCTTTTAAGGGAGCAAAGACATGTCCTGCTGCCCTGGGATTTGCACTTGCTGCTG GAACAACAGATGGGCCAGGAGCTTTTGATTTTAAGCAAGGTGATGTTAAGGGAAATCCTTTCTGGAACACGGTTCGCAAC TTACTTAAAAAGCCAGGCAAGGAACAAATAGACTGTCAGTACCCAAAGCCCATTTTGCTTGATATCGGTGAAATGAAGAT ACCATATGATTGGGCACCTTCAATACTTCCAATCCAGATTCTTCGAATTGGGCAGTTTGTTATTCTTAGTGTACCAGGAG AATTTACAACAATGGCTGGGAGGCGTCTACGTGATGCGGTGAAGGAAGTACTTAGTGCTGACAAAGACTTTGGTAGAAAC ATTCATGTTGTGCTAGCAGGGTTGACTAATACTTATTCACAGTATGTGACTACATATGAAGAGTACGAGGTGCAAAGATA TGAGGGTGCTTCGACGCTCTATGGTCCACACACACTGAGCGCATACATTCAGGAGTTTAAGAAGCTCGCGAACGCTCTCA TCAGTGGCCAGCCTGTAGAACCAGGGCCACAACCCCCTGACCTCCTGAACAAGCAAATAAGCTTCTTAACACCGGTTGTG ATGGATGGAACCCCTATTGGTGTACAGTTTGGGGACTGCAGCTCTGACGTACCGAAGAACGCCACCTTTAAGAAAGGTGA CATGGTGTCGGTTACATTCTGGTCCGCATGCCCTCGCAATGACCTTATGACTGAAGGCACATTCTCCTTGGTTGAATTTC TCCAAGGAAAGGATACTTGGGTTCCTGCTTATGATGATGATGATTTCTGCTTGCGCTTCAAGTGGTCTAGGCCTTTTAAA CTCAGTACTCACAGTAAAGCCACCATAGAATGGAGAATCCCACAAGATGCAGCTCCTGGTGTATACAGAATAAAGCATTT TGGTGCTGCAAAGGGCTTATTAGGATCAATTCATCACTTCACAGGCTCATGTAGTGCATTTGTAGTAACACAGTAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0010900.7) extracted from Lotus japonicus Gifu v1.2 Proteins.

MELPSLSHWRATATMRVWPFFLLLILLKSDVVYSDSNYLIGLGSYDITGPAADVNMMGYTNTEQIASGVHFRLRARTFIA AEPKGNRAAFVNLDACMASDLITTKVFERLKARYGDLYTEKNVAISGTHTHAGPGGFLQYVTYLVTSLGFVRQSFDVIVD GIEKSIIQAHENLRPGSIFVNKGELLDAGVNRSPSAYLNNPAAERSKYKYNVDKEMTLLKFVDDEWGPSGSFNWFATHGT SMSRTNSLISGDNKGAAARFMEDWFEKKGSAGFENDGLPRRISNIIPSLHANHHELLELAASFQSPPGRPATRTSSVARR VRGVLKQVDKPRFVSAFCQSNCGDVSPNTLGAFCLDTGLPCDFNHSTCGGKNELCYGRGPGYPDEFESTHTIGERQFRKA VELFNGASEQVKGKVDFRHAYIDFSQLEVNLSSAGAFKGAKTCPAALGFALAAGTTDGPGAFDFKQGDVKGNPFWNTVRN LLKKPGKEQIDCQYPKPILLDIGEMKIPYDWAPSILPIQILRIGQFVILSVPGEFTTMAGRRLRDAVKEVLSADKDFGRN IHVVLAGLTNTYSQYVTTYEEYEVQRYEGASTLYGPHTLSAYIQEFKKLANALISGQPVEPGPQPPDLLNKQISFLTPVV MDGTPIGVQFGDCSSDVPKNATFKKGDMVSVTFWSACPRNDLMTEGTFSLVEFLQGKDTWVPAYDDDDFCLRFKWSRPFK LSTHSKATIEWRIPQDAAPGVYRIKHFGAAKGLLGSIHHFTGSCSAFVVTQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP_EUK
SignalP-noTM
1 34 34 - –
Phobius
SIGNAL_PEPTIDE_N_REGION
1 16 16 - –
Phobius
SIGNAL_PEPTIDE
1 34 34 - –
PANTHER
PTHR12670:SF14
11 769 759 0.0 –
PANTHER
PTHR12670
11 769 759 0.0
IPR006823
Phobius
SIGNAL_PEPTIDE_H_REGION
17 27 11 - –
Phobius
SIGNAL_PEPTIDE_C_REGION
28 34 7 - –
Phobius
NON_CYTOPLASMIC_DOMAIN
35 771 737 - –
Pfam
PF04734
38 604 567 1.3E-230
IPR031329
Pfam
PF17048
606 769 164 3.8E-53
IPR031331
Gene3D
G3DSA:2.60.40.2300
637 771 135 2.6E-42
IPR038445

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0017040
Molecular function N-acylsphingosine amidohydrolase activity Catalysis of the reaction: N-acylsphingosine + H2O = a fatty acid + sphingosine.
Subterm of
GO:0046514
Biological process Ceramide catabolic process The chemical reactions and pathways resulting in the breakdown of ceramides, any N-acetylated sphingoid.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0010900.7, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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