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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0015100 |
| Transcript ID | LotjaGi1g1v0015100.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosomal RNA small subunit methyltransferase B; TAIR: AT3G13180.1 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein; Swiss-Prot: sp|P94464|RSMB_BACSU Probable ribosomal RNA small subunit methyltransferase B; TrEMBL-Plants: tr|G7KEH7|G7KEH7_MEDTR Ribosomal RNA small subunit methyltransferase B; Found in the gene: LotjaGi1g1v0015100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:1950159..1959193) extracted from Lotus japonicus Gifu genome v1.2.
GAGGCATAAAAAATTGAGAACTGCCAAGCGTGTAACGCGAAACTAAACATGGCGCAAGGGTTGTCTCTGGTTTCGCCTTT CCCCACAGAACCTCAGAAATCTTCGTCTTCTTCCATTCTGTTGAAGCTTCCCCATAGAACTCGCAGCACCAACACATCCA TTCCCACCACTAACAAAGGTAACAACAACAAAACTAACTTAATTTCCTACTACTAGCCTTATTCAGTGATGTTTCAATTT TCATTCATGACAACCAAAAACATTGAAACTTTCAGGTCCTGCCAACCGTTCTCTAAAACCCCAGAAGCTGAATTCAGAGA TTTCTCCTCATAGAGCTGGTATTGTATTTTATCCACCTCCATTCCCCTCAGTCATTATCATTGTCAATTGGGCTGTTAGT GTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGCGTGTGTGTGTGTATTTTCCTGCTTTTAA GATAACTTATCTTTTGGTTGTTGGGGGAACCCATCATAGTGTGTGTGTGTGTGTGTTTTCCTGCTTTTAAGATAACTTAT CTTTTCTCATCTCATTTGTTGGTTTTGTCAATGCTGTAGTGTCAGCGGTGAGGTTGATGCGGATTGAGTTTGGTGGTGCT TTTGCTGACCTTCTCAACGAGAAAGGGAAAGGTTCGGGTGAAAATGAGATGGGTTATGTTCAAAGAACGCTTGGCTTTCG AACCCGGGAATTAAATCACCACGACCTTAGATTGGTTATCACTTTCACCCCATTCTCACATTTACATACCAATACAAAAG ATTCTTTCTTTTAAATAAATTTGGCGCATTAGTCAATGCAAATAAAAAATTTCTAGTTTTACAACTGAAAGTGAGTTTCT TTTGTCCTCGGTGAAACTTGAAAGTGCGTGAGAAGGACTAAATGAGTCACTTATCTTTGTCTGGGATTGAGCACAGCTGT GCGAATACAATGCTTTACTTACAGTTCTATTGAAATGTTGATTGCTTCCTTTTTCATGTCATTTAGCATTCATGAATAAT TTTTTTGATCATTTTTTTTTTGTTTCATACTACAAATTACATAGGTTACCGATATTGTTGGGGGCACAATTCGTTGGAGA AGATACCTTGATCATTTGATTAGTTCATTATGTCATGATAAAGATATATCTAGCATGGAACCTCTTCTCTTACAGGTAAG TTTGGGCTCTGTGTTTCTTATGAGTATGTTTGCTTAGAGTCATCAACCAAGTAGATACTTCATGCATAGCACAAAAAGAA GGAGATACCCAGTGCAATTATGTATTCATTGTTGTGAGGCCTTGTATTGGACATCTGATTACTGACCTTACTGCTTTGTG TCAGATTCTACGAATTGGCTTCTATGAGATTGTCAAATTAGAAATGCCACCTTATGCTGTTGTAGATGAGGTATTTCTTT GGCCCTGATGTGTATTCCTTGTTTTGTGTTGAATTGATTGGATCAACTTTTCTTGTCTGATGTGGTTTTTGTTGCAAAGG ATTCTCACTTGTCGAATTTAGAGATTTTTTAAAAAATCATTTGTTGATTGTTGGTTTTAAGTTCATCTTCTATTTTATTC TTTGAAGAATTAAAAAGTCTGATGTTATTTTACTGTGATGTAAAGTTTGATTGGCTAATTTTTGTTAAAGTTCAATCTTT TATTCATGGTTTTATCAATCTGCTGTATGAAATGCAGAATGTTAGGCTTGCAAAAACTGCGCTCAGACCAGGTGCTGGCA ACATGGTCAATGGAATCCTGCGAAAGCTAGTTGTGCTCAAGGTTTATCTTTTTGCATATTACGTGTGTCTTAACTCTATG AGTGAGATATGTTGAAGAATTTCTCAATTCCATTTATGTTTGGCTTGCAGGAAAATGAAACTCTTCCTTTGCCCAAAGTG GAGGGCGATGATCGTGCTCAAGCACGGGCTCTGGCAACTCTCTATTCACATCCAGTTGTGAGTGTGTAACTGCTATCACT TTCTGCACCACTACTCACTCTAATTTAGGATAGTTCAGAATTAGAAATCAGTGGTGAATAAGGATTTCTTTATTTTCGTG GTCAACATCAATACCAGCAAAGCATGATTGGATTAAGGCTATGTTTGGCACGTTTAGCTGATAAGCTAGCTGAAAGCTGA AAAGCTAGCTGATAGCTGAAAAGATAGCTCATAGCTGAAAGTTGATAAGCTAGCTGAAAGCTGAAAATTTAGAGCTGTCA ATACGGGCCAGCCCAGCCCATATGGGTCAGCCCGTATGAGTTGGGTTGAAAACGGGTTGGGCTGTGTCAACCCGGGGCCT TAACGAGCCAGGAAAATATGAACCCAACCCGGCTCGTTACGAGCTCGCGGGTTGGCGGGCTGGCTCGCGGGTTGGCAGGC TGGCTCGCGGGTTGGGTGAAAAAATATAAAAAATAGATAAATTGGATTAGAAAATGTTTTAAAAAAATAATTTCACAAAA ATACTTAAAGAAATTGGTAACAACTCATAAGAAAGAGGTTTATCAACCCATTAATTTGTATGTCACATTTGAAATATAGT AAAGTAACTTTTTGGTTACAAAATATAGTAAAATAATTTAGTTGACAAGATTTAAAAACACAATTATTTTACTGTCACAT TTAAAATAAGATAAATAATAAAATAACAATAAATAAAACACAAAAAATTGTCTCAAATTTAAAGAAATGAAAATTTCCAT TTTTCTATCTAAAAGTAATCCATTAAACTAACCTTAAATTAAAGACAAATAAAATAATTTTTTTAATAAAAAATAACTCT AACCCGACGGGTTGGCTCGCTTGACCCGCGGGTTGGCCCGTCTAACCCGCGGGTTAAACGAGCCGGGTTGCACTAACCCA AGTTCTTTTCGAGCTGGAATTTAACCAACCCAACCCGGCTCATTTAGCCAACCCGTCGAGCTGGCTCGCGGGTTGGAACC CATATTGACAACTTTAGCTGAAAAGCTACGTAATTGTAACAAATGTGTTTGGTAAAATTAGTTGTTGAACAAACTGAAAT TGTAAAATGACATAAAAGGACATATTTGTATAATTATTTTTATATTTAACATTACTTTATTTTCACATTAATATCTATAG GATATTAATATTAAAATTATTATACCTTTAAATATTTTAATTTGACTCAATTTATTTATCATCTTAAAAATAGGTTTTCT GAAGGAACAAAAAAATCATATTAAAAATATAATATTAATTTTTACTTATTTTATTTTAACATTAATACCTATAGGTGGAA TTTTAATAAAATAATAAGGATAAAAATGACAATAAATTCAATAAGCTATAAGCTTTAAGCTATAAGCTACCTCAGATAGC TTATAGCTTAAAGCTTTAAGCTACTGAAATAAGCTCCTTCACCAAACACTTTTATAGAGCTTTTAAGCTAGTCAAATAAG CTTTAAGCTAGTCAAATAAGCTATAAGCTAGCTGAAATGACATGTCAAACATAGCCTAAATTTTAGGATTCCATGTACAA AATTCTGGATCCGAATAGTTATATATCAGAATATTAAGGGCCTTGGATATGGTACTTTCTGTTTTTAGCGTATCAGGTCT AGTATGTTATCAGCATTAAGATATGCAAAATGGCTCTAAACAGAAATTCCAAGAAAGAAGACTTGAATCCAAGTGCTTAA TGCATAGTTTGTACTCATTTTCTCCCAATCTCTCACATGTCTAAGCCCTAAAGCACTAGTGGTAATTTCTTAATGCAGTT TATAAAAACACACTTGATATGCTAACTTTGAAACACTAAAAAATTGTAACATGGATGTGGAATCTTGTATTTCAGAATTC AGATACCCTTAAGTGAATCTGATGCATCTCGTGTTGAGTGGTGGTTTCTGGATTGTTTATACTTATTAGGCAGTATCGTT GCTCACTATAATTCTGTATTTAGGCTAAAAATGAATAGATGTATATCCTAATTGTCTGTCCCTGTTCTACACAAAAGGGA TTTCGGAAGTATTCCACATGGCTGACAGGTTGAGTCTTGCTTCATGTTCCATGCATGATACAACTGAACACAACAGTTGA TTATCAGAGGATTTTGGTCTCACAAAAATTGTTAGTTATGAGTTATGACTATCAATGGTTTTTTTTTTGGATAACAACTT TTTATTTTTTTTTATAAATCAGAATGATAGTGAGATAGTGAATGCATGTTACTCCAATACTACTAGTCAATGTGCCATTT GCGTGCATGAGACCCCAGAATGGCAGGCAGAGGCCCACCTTATGATGGATTAGTAGTGTCCAGCCAGAAGAATATTTTCT TAATTATAAATAAACAATAAAAAAAGTACATAAACTTTGCTATTTGTGAAATTTCTTAGCACTAAAAAAGGTAGGCCAAA TTTAGTTGAACATCTTTTTATTGCTTCTTTTGCAGTGGATGGTAAGGAGATGGATAAAGTGTCTTGGCCAGGAAGAAGCC ATTAAGTTGATGATATGGAACAACAGTGAACCCAGTTTCAGCTTAAGGTTAGTTAATGCTTCTTCCGTTTTTCTATGTTG CACCCAAAGTAGCATGTAGCACAGATAATGCAGAACTAAAGCTATATATTTGTGCTAATTTCAGAGCAAACAGTGCTAGA GGATTTTCAAGAGATGACCTTGTGACACAGCTTAATGCTTTGAAGGTGGTAACACTTCCATGATTACAATGTGGCATTAC CTTGCTTATAATACTTTTAATTTTTTATTATTTTAATTATATTTTTAAATTCCTGCTTCCTGCAATTTCTTTTGAATGAA TCACTCTCTTTCTCTATGGGTCAGAAGATCATATTACATGTAAACATTACATTTGTAATTTACCTCTTGTTCCTTGTATC ATCTGTGATTGCTTCCAGCCTTAAGTCTCTTTTATTGAATATCAGGTCCCCCACAAGCTTTCAATGTATTTGGATGAATT TGTTCGTATCAAAACTGGGTTGCAGGTATGATAGTGAGATAGTGAATTGATTATAAAGCTGTGTTTATTTCAAAATTTCC TAACTAAGATCATAAATTTCTATGGTGTGAAACAATGACAATTGACAAGAGGAAAAAAGCTGTAGGGACTGAACTATGTA GTATATATTTTCTACTTTATGTAACAGCGTAATAGCTTAAAAAGTTAGATAGTGTGAAAGTGCGTTTTAGCTGGCCACTG ACCTACTGTGAATACATCTCTTATTTAATTTTTCCCTATGGGAGGTGTTAAAGTCATGTGTCTTGCTGTTATTATCAGTT ACGAGAGTAAGCATGACTTTCTTATTTAAGTTATTCACTATTTGTAGTTTCACATTTCAGATTATCATTCATGCTGGCCT ACTCAAAAAGGGTTTATGCTCAGTTCAGGATGAGAGTGCAGGTCAACTTGTCATATTTTCACGTAGAAGGAATGATTATA AGTCTATAATATCTGGAGTTTCTTTTCCCTTTGTTCTCCTGTTCTACATGGAACAATGACCTCTGCTTTGCTAAGATGAT CTTCCAGTGTTCATATATTAGTAGGGCTGTAGTTTCTAAATGATATTCTCTAGTGTTTCATAGAATATAGGATATGTGAG TCACCAATTAGCATCATTTAGGTAATAAGCCTAGAAACCTTTAGAAGGAGCCATATGGCCAAGGGACATACAATTTATGT ACTCTATGTTTTGCGGTTTGCCAAATATGTTGATTAAAACAAAGAAAACTTCAAGTTCTTCCCGTATTTCCCTTTTAATA ATTAAATGAAATTCTTGTCTTACATGGCTATATTCTCATACAATGAGTGACATATTCTCAAGTGCAGGTTTAATAGTTTC TATTGTGGATCCTCAGCCTGGTGAAACTATTGTTGATTGTTGTGCTGCTCCTGGTGGAAAGACCCTCTACATGGCCTCTC ATTTAAGTGGCCAAGGTAATAATTGGTCTAAGAAAATTCATTGAGATCATGTTGGAATTCAATTTCCATAGAATCCCTAA TAAATGTTTTCTTTATTTTTCTCCATGGAAGAGATTCATTCCCATATAGTTACTTTTAGTGAATTAGGTCATATATCTTT ATAGTTGTGAACATAGTTTCACTTTTTTCCAATTGTCAAAACATAAAATCTGGCAAATAAGTTCTCTTTATTGGAAATAT TAATCTCGTTGGAGCTTCTTTCAAACCACCAACCATTGTTTTCTTTTTGACTCTGCAATGTTCTAACTTACTGATATGTT GATATACTAGCTTCTTGTTTAGTTACTTCATCACCCCACCAAATTGAATGTTAACAGAAAAATTAGCTTGTGTTTTCAGG TATGATATATGCTGTTGATGTAAATAGTGGCAGGTTGAGAATTCTTAAAGAGACAGCAAAGTTGCACCAAGTAGATGGTG TCGTTACCACCGTACATGCTGATCTCCGTACATTAACTGTGCGTTATATCATTTTGATGCTATATTGAACTCAGTTGTAG TTTATTTCTTATTGGTTTCCCTTTGTGTTTCCCAGGAGGATAGCGGACCACTCAAAAGTAACAAAGTTTTGTTGGACGCT CCGTGCTCTGGACTTGGTGTTCTTTCAAAGGTGGTTATCTCAAATAAGTAATGTTTGCTCATTGTCATTGTTTTCGCATA ATTATTCAATGCATTTCCATTTTCTTGTTTGTTTAATCTGTTTTTATTCCTGGGCTTTTAAAGAGAGCAGACCTACGTTG GAACAGGAAGCTGGAGGATATGGAACAACTGAAGAAATTACAAGATGAGCTCCTGGATGCTGCATCCAAGTAAAGCCATA AACTCTCTTTGGTTTTCCCGAATTTTTTTGATGTTATAATCAAACATGTGATTTCTTATATTGAACTATAATCACGGATC TTCTTCGAAGATATTTGAAAATTTTTAGTAGTTCTGGGAATGATGAGAAAGTTCACACCTAAATTAGAAACCAGTTCCAA CTATGCTTTGTTCATCATGAAAAACCGTTTAGTTATGAAGATCAGTTGATGAAGTGTCAATATTTTTAGCTCAGTGAATA CATTACATGAAGTGGATCAAGGCTTGTTGTATGCTTAGATAATAACTTGAGTATCCAAACTTTGAAAGCGAATTTTACAC AAGTAGCTAAAACTTATCTATGATGTACTGTTTCTCCCTCATGGAATTTTTTGTTCCTACAAATGTAGATTGGTAAACCC TGGGGGTGTGTTAGTTTACAGTACATGCTCCATAGATCCTGAAGAGAATGACGAGAGGATAGCAGCATTTCTTGTAAGAC ATCCAGTAAGTATTGTCACTGTTTGCTTACTAATCTTCTTCAAATATTTTAATTTTTGGTTTAAGATATGCTTTCCTTTT ACAATACTTTAACTTCAGTTTGGATATTTATTGGGAGGTTACATCTTGTTATCCATGTTAATGAGACATGACTTGTATGC CAGCTGTTCAAGTGCCAAATCCTCTCCAGCTGGGTGATGGGCTTCTTTAGAAAAATTAGATACTATGTTATTCAGGGAAA TTGTTGACTAGCTGTGAAGGTTACTTGGAAGTTCAATTTAAGGCTGGGTTTGGAAAAATTCAATTAAATTTTTCTTATAA CATACAGTTATGTAACTGTTTGGGTAAGCTTATGACCTACCTATAGGCTGTTTTCAGCTTATTTTCATAAACTGCTCAAA TTGGCTTATGAATAAGTGTTTATAGTTTATACCTTCTTACCTAAAAACTATTTTGAGCTTATTCCAATAAGCTTCTCAAA TAAGTTTGTGAATGAGTGCTTATGTGATAAACGCTTAATTAAGCTTCTTAGAATAACATGTGTTGAGACTAACTCTAACC CAAAAGCTAGCAGTTAGAGGTGAGGGTTGCACTACCCTATATAAAGACTTATTTGGTCATATCTCTAGTCAATGTGAATT TCTCAACACATCTACTCACGCCCAGGGCTGGACATCTATAGCGTGGAATTTGCAAGAATAGCCATTTGCGGGTGACCCAT ATACGGGTTGTCTCCAATTAACAGATGTAGGATAGACTCTGATACCATATTAGAATTTGGGTTAGGCCTAACTCTACCTC AAAAGCTAGCTTAGAGATGAGGGTTACACTACCCTATATAAAGGCTTATTTGGCCAAATCTCCAGTCAATGTGAGACTTC TCAACGAAGTTGTTACCCAAAAGCACCCTAAATATGGAAAATCAAATGCTTTGTGTGTCAATGATTAGGTGTCGTTAAAC TTCTTAGAGCATGTATGATTATTCTCATATGATATTCTTTCCTGAACAACACTATGGGTTTGTGAAGAGCAGCATGCATA TCATTCTCTGTAGAGTTCAATACTCTGATGTCTAATCTCATTTTTCAAGTGCTAATTTATCTTTCTCTGAATTTCAGGAT TTTCATATTGACCCTGTAGACAGATATGTTCCACCTGATTTTGTGACACACAGTGGTTTCTATTTCTCCAACCCAGTAAA ACATTCACTGGATGGCTCATTTGCAGCACGTTTGGTACGAGATTCATAAAACGAATTTCAGGGAAAGCCTTGGTCATTCC ATCCCCAGTTGGATGACATCAATGAAAAAGAAGAGGCTGCTGAAGTTGCTTATGTGCTGGTCTGTCTCTCCAATGCTTCA TGCTTTGAAATCAAGCACGTGCCGTCAGTAGGATGATACTTCACCTCCATATCAGACCTTTTGATTTCTCTTCCCATGAA AGGTTTATAGAGGAGATTGCCAGTGAGTTCTCTTTCATCAGGGGCTTTCATAAGATGATGAGTTTATGATAGAGATTTAT GATAGAGGTAGAGGTAGAGTTAGAGAATGCTTGTAATCCTCTTCAAAAAGAGAGACTTTAGATTTCTTTCATATTTGTTG AGAGTTTAGAGATATTGTAAACTATCCTTGTGAAATGAGATTGAGAAAAACACTTGCTTTGGTTAAAAGAGGTATTGTAT TCTTATTTCATAATGAAGATAATTTTCTAGACTTCATTCTTCCCTTTCATGTTGAAAGAGTTTTTCACTTATCAT
CDS sequence (LotjaGi1g1v0015100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGCAAGGGTTGTCTCTGGTTTCGCCTTTCCCCACAGAACCTCAGAAATCTTCGTCTTCTTCCATTCTGTTGAAGCT TCCCCATAGAACTCGCAGCACCAACACATCCATTCCCACCACTAACAAAGGTCCTGCCAACCGTTCTCTAAAACCCCAGA AGCTGAATTCAGAGATTTCTCCTCATAGAGCTGTGTCAGCGGTGAGGTTGATGCGGATTGAGTTTGGTGGTGCTTTTGCT GACCTTCTCAACGAGAAAGGGAAAGGTTCGGGTGAAAATGAGATGGGTTATGTTCAAAGAACGCTTGGCTTTCGAACCCG GGAATTAAATCACCACGACCTTAGATTGGTTACCGATATTGTTGGGGGCACAATTCGTTGGAGAAGATACCTTGATCATT TGATTAGTTCATTATGTCATGATAAAGATATATCTAGCATGGAACCTCTTCTCTTACAGATTCTACGAATTGGCTTCTAT GAGATTGTCAAATTAGAAATGCCACCTTATGCTGTTGTAGATGAGAATGTTAGGCTTGCAAAAACTGCGCTCAGACCAGG TGCTGGCAACATGGTCAATGGAATCCTGCGAAAGCTAGTTGTGCTCAAGGAAAATGAAACTCTTCCTTTGCCCAAAGTGG AGGGCGATGATCGTGCTCAAGCACGGGCTCTGGCAACTCTCTATTCACATCCAGTTTGGATGGTAAGGAGATGGATAAAG TGTCTTGGCCAGGAAGAAGCCATTAAGTTGATGATATGGAACAACAGTGAACCCAGTTTCAGCTTAAGAGCAAACAGTGC TAGAGGATTTTCAAGAGATGACCTTGTGACACAGCTTAATGCTTTGAAGGTCCCCCACAAGCTTTCAATGTATTTGGATG AATTTGTTCGTATCAAAACTGGGTTGCAGATTATCATTCATGCTGGCCTACTCAAAAAGGGTTTATGCTCAGTTCAGGAT GAGAGTGCAGGTTTAATAGTTTCTATTGTGGATCCTCAGCCTGGTGAAACTATTGTTGATTGTTGTGCTGCTCCTGGTGG AAAGACCCTCTACATGGCCTCTCATTTAAGTGGCCAAGGTATGATATATGCTGTTGATGTAAATAGTGGCAGGTTGAGAA TTCTTAAAGAGACAGCAAAGTTGCACCAAGTAGATGGTGTCGTTACCACCGTACATGCTGATCTCCGTACATTAACTGAG GATAGCGGACCACTCAAAAGTAACAAAGTTTTGTTGGACGCTCCGTGCTCTGGACTTGGTGTTCTTTCAAAGAGAGCAGA CCTACGTTGGAACAGGAAGCTGGAGGATATGGAACAACTGAAGAAATTACAAGATGAGCTCCTGGATGCTGCATCCAAAT TGGTAAACCCTGGGGGTGTGTTAGTTTACAGTACATGCTCCATAGATCCTGAAGAGAATGACGAGAGGATAGCAGCATTT CTTGTAAGACATCCAGATTTTCATATTGACCCTGTAGACAGATATGTTCCACCTGATTTTGTGACACACAGTGGTTTCTA TTTCTCCAACCCAGTAAAACATTCACTGGATGGCTCATTTGCAGCACGTTTGGTACGAGATTCATAA
Protein sequence (LotjaGi1g1v0015100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAQGLSLVSPFPTEPQKSSSSSILLKLPHRTRSTNTSIPTTNKGPANRSLKPQKLNSEISPHRAVSAVRLMRIEFGGAFA DLLNEKGKGSGENEMGYVQRTLGFRTRELNHHDLRLVTDIVGGTIRWRRYLDHLISSLCHDKDISSMEPLLLQILRIGFY EIVKLEMPPYAVVDENVRLAKTALRPGAGNMVNGILRKLVVLKENETLPLPKVEGDDRAQARALATLYSHPVWMVRRWIK CLGQEEAIKLMIWNNSEPSFSLRANSARGFSRDDLVTQLNALKVPHKLSMYLDEFVRIKTGLQIIIHAGLLKKGLCSVQD ESAGLIVSIVDPQPGETIVDCCAAPGGKTLYMASHLSGQGMIYAVDVNSGRLRILKETAKLHQVDGVVTTVHADLRTLTE DSGPLKSNKVLLDAPCSGLGVLSKRADLRWNRKLEDMEQLKKLQDELLDAASKLVNPGGVLVYSTCSIDPEENDERIAAF LVRHPDFHIDPVDRYVPPDFVTHSGFYFSNPVKHSLDGSFAARLVRDS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 58 | 58 | - | – | |
| MobiDBLite | 9 | 58 | 50 | - | – | |
| PANTHER | 22 | 527 | 506 | 1.9E-259 | – | |
| PANTHER | 22 | 527 | 506 | 1.9E-259 | – | |
| PRINTS | 68 | 91 | 24 | 2.4E-35 | ||
| Gene3D | 91 | 219 | 129 | 3.3E-25 | ||
| PRINTS | 92 | 108 | 17 | 2.4E-35 | ||
| Pfam | 93 | 200 | 108 | 8.5E-23 | ||
| SUPERFAMILY | 99 | 234 | 136 | 2.49E-26 | ||
| TIGRFAM | 104 | 526 | 423 | 4.1E-83 | ||
| PRINTS | 207 | 220 | 14 | 2.4E-35 | ||
| SUPERFAMILY | 222 | 526 | 305 | 3.35E-63 | ||
| Gene3D | 225 | 526 | 302 | 2.8E-65 | – | |
| ProSiteProfiles | 250 | 527 | 278 | 52.564 | ||
| PRINTS | 310 | 324 | 15 | 4.8E-23 | ||
| Pfam | 329 | 524 | 196 | 3.4E-50 | ||
| CDD | 337 | 464 | 128 | 2.39772E-7 | – | |
| PRINTS | 339 | 349 | 11 | 4.8E-23 | ||
| PRINTS | 408 | 420 | 13 | 4.8E-23 | ||
| PRINTS | 458 | 474 | 17 | 4.8E-23 | ||
| PRINTS | 485 | 497 | 13 | 2.4E-35 | ||
| PRINTS | 509 | 526 | 18 | 4.8E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | RRNA processing | Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules. | ||
| Molecular function | Methyltransferase activity | Catalysis of the transfer of a methyl group to an acceptor molecule. | ||
| Molecular function | RRNA methyltransferase activity | Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a nucleoside residue in an rRNA molecule. |
Expression pattern of LotjaGi1g1v0015100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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