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LotjaGi1g1v0015100.3

Overview

Field Value
Gene ID LotjaGi1g1v0015100
Transcript ID LotjaGi1g1v0015100.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Ribosomal RNA small subunit methyltransferase B; TAIR: AT3G13180.1 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein; Swiss-Prot: sp|P94464|RSMB_BACSU Probable ribosomal RNA small subunit methyltransferase B; TrEMBL-Plants: tr|I1JJK1|I1JJK1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0015100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:1950665..1958895) extracted from Lotus japonicus Gifu genome v1.2.

CCCCAGAAGCTGAATTCAGAGATTTCTCCTCATAGAGCTGGTATTGTATTTTATCCACCTCCATTCCCCTCAGTCATTAT CATTGTCAATTGGGCTGTTAGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGCGTGTGT GTGTGTATTTTCCTGCTTTTAAGATAACTTATCTTTTGGTTGTTGGGGGAACCCATCATAGTGTGTGTGTGTGTGTGTTT TCCTGCTTTTAAGATAACTTATCTTTTCTCATCTCATTTGTTGGTTTTGTCAATGCTGTAGTGTCAGCGGTGAGGTTGAT GCGGATTGAGTTTGGTGGTGCTTTTGCTGACCTTCTCAACGAGAAAGGGAAAGGTTCGGGTGAAAATGAGATGGGTTATG TTCAAAGAACGCTTGGCTTTCGAACCCGGGAATTAAATCACCACGACCTTAGATTGGTTATCACTTTCACCCCATTCTCA CATTTACATACCAATACAAAAGATTCTTTCTTTTAAATAAATTTGGCGCATTAGTCAATGCAAATAAAAAATTTCTAGTT TTACAACTGAAAGTGAGTTTCTTTTGTCCTCGGTGAAACTTGAAAGTGCGTGAGAAGGACTAAATGAGTCACTTATCTTT GTCTGGGATTGAGCACAGCTGTGCGAATACAATGCTTTACTTACAGTTCTATTGAAATGTTGATTGCTTCCTTTTTCATG TCATTTAGCATTCATGAATAATTTTTTTGATCATTTTTTTTTTGTTTCATACTACAAATTACATAGGTTACCGATATTGT TGGGGGCACAATTCGTTGGAGAAGATACCTTGATCATTTGATTAGTTCATTATGTCATGATAAAGATATATCTAGCATGG AACCTCTTCTCTTACAGGTAAGTTTGGGCTCTGTGTTTCTTATGAGTATGTTTGCTTAGAGTCATCAACCAAGTAGATAC TTCATGCATAGCACAAAAAGAAGGAGATACCCAGTGCAATTATGTATTCATTGTTGTGAGGCCTTGTATTGGACATCTGA TTACTGACCTTACTGCTTTGTGTCAGATTCTACGAATTGGCTTCTATGAGATTGTCAAATTAGAAATGCCACCTTATGCT GTTGTAGATGAGGTATTTCTTTGGCCCTGATGTGTATTCCTTGTTTTGTGTTGAATTGATTGGATCAACTTTTCTTGTCT GATGTGGTTTTTGTTGCAAAGGATTCTCACTTGTCGAATTTAGAGATTTTTTAAAAAATCATTTGTTGATTGTTGGTTTT AAGTTCATCTTCTATTTTATTCTTTGAAGAATTAAAAAGTCTGATGTTATTTTACTGTGATGTAAAGTTTGATTGGCTAA TTTTTGTTAAAGTTCAATCTTTTATTCATGGTTTTATCAATCTGCTGTATGAAATGCAGAATGTTAGGCTTGCAAAAACT GCGCTCAGACCAGGTGCTGGCAACATGGTCAATGGAATCCTGCGAAAGCTAGTTGTGCTCAAGGTTTATCTTTTTGCATA TTACGTGTGTCTTAACTCTATGAGTGAGATATGTTGAAGAATTTCTCAATTCCATTTATGTTTGGCTTGCAGGAAAATGA AACTCTTCCTTTGCCCAAAGTGGAGGGCGATGATCGTGCTCAAGCACGGGCTCTGGCAACTCTCTATTCACATCCAGTTG TGAGTGTGTAACTGCTATCACTTTCTGCACCACTACTCACTCTAATTTAGGATAGTTCAGAATTAGAAATCAGTGGTGAA TAAGGATTTCTTTATTTTCGTGGTCAACATCAATACCAGCAAAGCATGATTGGATTAAGGCTATGTTTGGCACGTTTAGC TGATAAGCTAGCTGAAAGCTGAAAAGCTAGCTGATAGCTGAAAAGATAGCTCATAGCTGAAAGTTGATAAGCTAGCTGAA AGCTGAAAATTTAGAGCTGTCAATACGGGCCAGCCCAGCCCATATGGGTCAGCCCGTATGAGTTGGGTTGAAAACGGGTT GGGCTGTGTCAACCCGGGGCCTTAACGAGCCAGGAAAATATGAACCCAACCCGGCTCGTTACGAGCTCGCGGGTTGGCGG GCTGGCTCGCGGGTTGGCAGGCTGGCTCGCGGGTTGGGTGAAAAAATATAAAAAATAGATAAATTGGATTAGAAAATGTT TTAAAAAAATAATTTCACAAAAATACTTAAAGAAATTGGTAACAACTCATAAGAAAGAGGTTTATCAACCCATTAATTTG TATGTCACATTTGAAATATAGTAAAGTAACTTTTTGGTTACAAAATATAGTAAAATAATTTAGTTGACAAGATTTAAAAA CACAATTATTTTACTGTCACATTTAAAATAAGATAAATAATAAAATAACAATAAATAAAACACAAAAAATTGTCTCAAAT TTAAAGAAATGAAAATTTCCATTTTTCTATCTAAAAGTAATCCATTAAACTAACCTTAAATTAAAGACAAATAAAATAAT TTTTTTAATAAAAAATAACTCTAACCCGACGGGTTGGCTCGCTTGACCCGCGGGTTGGCCCGTCTAACCCGCGGGTTAAA CGAGCCGGGTTGCACTAACCCAAGTTCTTTTCGAGCTGGAATTTAACCAACCCAACCCGGCTCATTTAGCCAACCCGTCG AGCTGGCTCGCGGGTTGGAACCCATATTGACAACTTTAGCTGAAAAGCTACGTAATTGTAACAAATGTGTTTGGTAAAAT TAGTTGTTGAACAAACTGAAATTGTAAAATGACATAAAAGGACATATTTGTATAATTATTTTTATATTTAACATTACTTT ATTTTCACATTAATATCTATAGGATATTAATATTAAAATTATTATACCTTTAAATATTTTAATTTGACTCAATTTATTTA TCATCTTAAAAATAGGTTTTCTGAAGGAACAAAAAAATCATATTAAAAATATAATATTAATTTTTACTTATTTTATTTTA ACATTAATACCTATAGGTGGAATTTTAATAAAATAATAAGGATAAAAATGACAATAAATTCAATAAGCTATAAGCTTTAA GCTATAAGCTACCTCAGATAGCTTATAGCTTAAAGCTTTAAGCTACTGAAATAAGCTCCTTCACCAAACACTTTTATAGA GCTTTTAAGCTAGTCAAATAAGCTTTAAGCTAGTCAAATAAGCTATAAGCTAGCTGAAATGACATGTCAAACATAGCCTA AATTTTAGGATTCCATGTACAAAATTCTGGATCCGAATAGTTATATATCAGAATATTAAGGGCCTTGGATATGGTACTTT CTGTTTTTAGCGTATCAGGTCTAGTATGTTATCAGCATTAAGATATGCAAAATGGCTCTAAACAGAAATTCCAAGAAAGA AGACTTGAATCCAAGTGCTTAATGCATAGTTTGTACTCATTTTCTCCCAATCTCTCACATGTCTAAGCCCTAAAGCACTA GTGGTAATTTCTTAATGCAGTTTATAAAAACACACTTGATATGCTAACTTTGAAACACTAAAAAATTGTAACATGGATGT GGAATCTTGTATTTCAGAATTCAGATACCCTTAAGTGAATCTGATGCATCTCGTGTTGAGTGGTGGTTTCTGGATTGTTT ATACTTATTAGGCAGTATCGTTGCTCACTATAATTCTGTATTTAGGCTAAAAATGAATAGATGTATATCCTAATTGTCTG TCCCTGTTCTACACAAAAGGGATTTCGGAAGTATTCCACATGGCTGACAGGTTGAGTCTTGCTTCATGTTCCATGCATGA TACAACTGAACACAACAGTTGATTATCAGAGGATTTTGGTCTCACAAAAATTGTTAGTTATGAGTTATGACTATCAATGG TTTTTTTTTTGGATAACAACTTTTTATTTTTTTTTATAAATCAGAATGATAGTGAGATAGTGAATGCATGTTACTCCAAT ACTACTAGTCAATGTGCCATTTGCGTGCATGAGACCCCAGAATGGCAGGCAGAGGCCCACCTTATGATGGATTAGTAGTG TCCAGCCAGAAGAATATTTTCTTAATTATAAATAAACAATAAAAAAAGTACATAAACTTTGCTATTTGTGAAATTTCTTA GCACTAAAAAAGGTAGGCCAAATTTAGTTGAACATCTTTTTATTGCTTCTTTTGCAGTGGATGGTAAGGAGATGGATAAA GTGTCTTGGCCAGGAAGAAGCCATTAAGTTGATGATATGGAACAACAGTGAACCCAGTTTCAGCTTAAGGTTAGTTAATG CTTCTTCCGTTTTTCTATGTTGCACCCAAAGTAGCATGTAGCACAGATAATGCAGAACTAAAGCTATATATTTGTGCTAA TTTCAGAGCAAACAGTGCTAGAGGATTTTCAAGAGATGACCTTGTGACACAGCTTAATGCTTTGAAGGTGGTAACACTTC CATGATTACAATGTGGCATTACCTTGCTTATAATACTTTTAATTTTTTATTATTTTAATTATATTTTTAAATTCCTGCTT CCTGCAATTTCTTTTGAATGAATCACTCTCTTTCTCTATGGGTCAGAAGATCATATTACATGTAAACATTACATTTGTAA TTTACCTCTTGTTCCTTGTATCATCTGTGATTGCTTCCAGCCTTAAGTCTCTTTTATTGAATATCAGGTCCCCCACAAGC TTTCAATGTATTTGGATGAATTTGTTCGTATCAAAACTGGGTTGCAGGTATGATAGTGAGATAGTGAATTGATTATAAAG CTGTGTTTATTTCAAAATTTCCTAACTAAGATCATAAATTTCTATGGTGTGAAACAATGACAATTGACAAGAGGAAAAAA GCTGTAGGGACTGAACTATGTAGTATATATTTTCTACTTTATGTAACAGCGTAATAGCTTAAAAAGTTAGATAGTGTGAA AGTGCGTTTTAGCTGGCCACTGACCTACTGTGAATACATCTCTTATTTAATTTTTCCCTATGGGAGGTGTTAAAGTCATG TGTCTTGCTGTTATTATCAGTTACGAGAGTAAGCATGACTTTCTTATTTAAGTTATTCACTATTTGTAGTTTCACATTTC AGATTATCATTCATGCTGGCCTACTCAAAAAGGGTTTATGCTCAGTTCAGGATGAGAGTGCAGGTCAACTTGTCATATTT TCACGTAGAAGGAATGATTATAAGTCTATAATATCTGGAGTTTCTTTTCCCTTTGTTCTCCTGTTCTACATGGAACAATG ACCTCTGCTTTGCTAAGATGATCTTCCAGTGTTCATATATTAGTAGGGCTGTAGTTTCTAAATGATATTCTCTAGTGTTT CATAGAATATAGGATATGTGAGTCACCAATTAGCATCATTTAGGTAATAAGCCTAGAAACCTTTAGAAGGAGCCATATGG CCAAGGGACATACAATTTATGTACTCTATGTTTTGCGGTTTGCCAAATATGTTGATTAAAACAAAGAAAACTTCAAGTTC TTCCCGTATTTCCCTTTTAATAATTAAATGAAATTCTTGTCTTACATGGCTATATTCTCATACAATGAGTGACATATTCT CAAGTGCAGGTTTAATAGTTTCTATTGTGGATCCTCAGCCTGGTGAAACTATTGTTGATTGTTGTGCTGCTCCTGGTGGA AAGACCCTCTACATGGCCTCTCATTTAAGTGGCCAAGGTAATAATTGGTCTAAGAAAATTCATTGAGATCATGTTGGAAT TCAATTTCCATAGAATCCCTAATAAATGTTTTCTTTATTTTTCTCCATGGAAGAGATTCATTCCCATATAGTTACTTTTA GTGAATTAGGTCATATATCTTTATAGTTGTGAACATAGTTTCACTTTTTTCCAATTGTCAAAACATAAAATCTGGCAAAT AAGTTCTCTTTATTGGAAATATTAATCTCGTTGGAGCTTCTTTCAAACCACCAACCATTGTTTTCTTTTTGACTCTGCAA TGTTCTAACTTACTGATATGTTGATATACTAGCTTCTTGTTTAGTTACTTCATCACCCCACCAAATTGAATGTTAACAGA AAAATTAGCTTGTGTTTTCAGGTATGATATATGCTGTTGATGTAAATAGTGGCAGGTTGAGAATTCTTAAAGAGACAGCA AAGTTGCACCAAGTAGATGGTGTCGTTACCACCGTACATGCTGATCTCCGTACATTAACTGTGCGTTATATCATTTTGAT GCTATATTGAACTCAGTTGTAGTTTATTTCTTATTGGTTTCCCTTTGTGTTTCCCAGGAGGATAGCGGACCACTCAAAAG TAACAAAGTTTTGTTGGACGCTCCGTGCTCTGGACTTGGTGTTCTTTCAAAGGTGGTTATCTCAAATAAGTAATGTTTGC TCATTGTCATTGTTTTCGCATAATTATTCAATGCATTTCCATTTTCTTGTTTGTTTAATCTGTTTTTATTCCTGGGCTTT TAAAGAGAGCAGACCTACGTTGGAACAGGAAGCTGGAGGATATGGAACAACTGAAGAAATTACAAGATGAGCTCCTGGAT GCTGCATCCAAGTAAAGCCATAAACTCTCTTTGGTTTTCCCGAATTTTTTTGATGTTATAATCAAACATGTGATTTCTTA TATTGAACTATAATCACGGATCTTCTTCGAAGATATTTGAAAATTTTTAGTAGTTCTGGGAATGATGAGAAAGTTCACAC CTAAATTAGAAACCAGTTCCAACTATGCTTTGTTCATCATGAAAAACCGTTTAGTTATGAAGATCAGTTGATGAAGTGTC AATATTTTTAGCTCAGTGAATACATTACATGAAGTGGATCAAGGCTTGTTGTATGCTTAGATAATAACTTGAGTATCCAA ACTTTGAAAGCGAATTTTACACAAGTAGCTAAAACTTATCTATGATGTACTGTTTCTCCCTCATGGAATTTTTTGTTCCT ACAAATGTAGATTGGTAAACCCTGGGGGTGTGTTAGTTTACAGTACATGCTCCATAGATCCTGAAGAGAATGACGAGAGG ATAGCAGCATTTCTTGTAAGACATCCAGTAAGTATTGTCACTGTTTGCTTACTAATCTTCTTCAAATATTTTAATTTTTG GTTTAAGATATGCTTTCCTTTTACAATACTTTAACTTCAGTTTGGATATTTATTGGGAGGTTACATCTTGTTATCCATGT TAATGAGACATGACTTGTATGCCAGCTGTTCAAGTGCCAAATCCTCTCCAGCTGGGTGATGGGCTTCTTTAGAAAAATTA GATACTATGTTATTCAGGGAAATTGTTGACTAGCTGTGAAGGTTACTTGGAAGTTCAATTTAAGGCTGGGTTTGGAAAAA TTCAATTAAATTTTTCTTATAACATACAGTTATGTAACTGTTTGGGTAAGCTTATGACCTACCTATAGGCTGTTTTCAGC TTATTTTCATAAACTGCTCAAATTGGCTTATGAATAAGTGTTTATAGTTTATACCTTCTTACCTAAAAACTATTTTGAGC TTATTCCAATAAGCTTCTCAAATAAGTTTGTGAATGAGTGCTTATGTGATAAACGCTTAATTAAGCTTCTTAGAATAACA TGTGTTGAGACTAACTCTAACCCAAAAGCTAGCAGTTAGAGGTGAGGGTTGCACTACCCTATATAAAGACTTATTTGGTC ATATCTCTAGTCAATGTGAATTTCTCAACACATCTACTCACGCCCAGGGCTGGACATCTATAGCGTGGAATTTGCAAGAA TAGCCATTTGCGGGTGACCCATATACGGGTTGTCTCCAATTAACAGATGTAGGATAGACTCTGATACCATATTAGAATTT GGGTTAGGCCTAACTCTACCTCAAAAGCTAGCTTAGAGATGAGGGTTACACTACCCTATATAAAGGCTTATTTGGCCAAA TCTCCAGTCAATGTGAGACTTCTCAACGAAGTTGTTACCCAAAAGCACCCTAAATATGGAAAATCAAATGCTTTGTGTGT CAATGATTAGGTGTCGTTAAACTTCTTAGAGCATGTATGATTATTCTCATATGATATTCTTTCCTGAACAACACTATGGG TTTGTGAAGAGCAGCATGCATATCATTCTCTGTAGAGTTCAATACTCTGATGTCTAATCTCATTTTTCAAGTGCTAATTT ATCTTTCTCTGAATTTCAGGATTTTCATATTGACCCTGTAGACAGATATGTTCCACCTGATTTTGTGACACACAGTGGTT TCTATTTCTCCAACCCAGTAAAACATTCACTGGATGGCTCATTTGCAGCACGTTTGGTACGAGATTCATAA 

CDS sequence (LotjaGi1g1v0015100.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCGGATTGAGTTTGGTGGTGCTTTTGCTGACCTTCTCAACGAGAAAGGGAAAGGTTCGGGTGAAAATGAGATGGGTTA TGTTCAAAGAACGCTTGGCTTTCGAACCCGGGAATTAAATCACCACGACCTTAGATTGGTTACCGATATTGTTGGGGGCA CAATTCGTTGGAGAAGATACCTTGATCATTTGATTAGTTCATTATGTCATGATAAAGATATATCTAGCATGGAACCTCTT CTCTTACAGATTCTACGAATTGGCTTCTATGAGATTGTCAAATTAGAAATGCCACCTTATGCTGTTGTAGATGAGAATGT TAGGCTTGCAAAAACTGCGCTCAGACCAGGTGCTGGCAACATGGTCAATGGAATCCTGCGAAAGCTAGTTGTGCTCAAGG AAAATGAAACTCTTCCTTTGCCCAAAGTGGAGGGCGATGATCGTGCTCAAGCACGGGCTCTGGCAACTCTCTATTCACAT CCATGGATGGTAAGGAGATGGATAAAGTGTCTTGGCCAGGAAGAAGCCATTAAGTTGATGATATGGAACAACAGTGAACC CAGTTTCAGCTTAAGAGCAAACAGTGCTAGAGGATTTTCAAGAGATGACCTTGTGACACAGCTTAATGCTTTGAAGGTCC CCCACAAGCTTTCAATGTATTTGGATGAATTTGTTCGTATCAAAACTGGGTTGCAGATTATCATTCATGCTGGCCTACTC AAAAAGGGTTTATGCTCAGTTCAGGATGAGAGTGCAGGTTTAATAGTTTCTATTGTGGATCCTCAGCCTGGTGAAACTAT TGTTGATTGTTGTGCTGCTCCTGGTGGAAAGACCCTCTACATGGCCTCTCATTTAAGTGGCCAAGGTATGATATATGCTG TTGATGTAAATAGTGGCAGGTTGAGAATTCTTAAAGAGACAGCAAAGTTGCACCAAGTAGATGGTGTCGTTACCACCGTA CATGCTGATCTCCGTACATTAACTGAGGATAGCGGACCACTCAAAAGTAACAAAGTTTTGTTGGACGCTCCGTGCTCTGG ACTTGGTGTTCTTTCAAAGAGAGCAGACCTACGTTGGAACAGGAAGCTGGAGGATATGGAACAACTGAAGAAATTACAAG ATGAGCTCCTGGATGCTGCATCCAAATTGGTAAACCCTGGGGGTGTGTTAGTTTACAGTACATGCTCCATAGATCCTGAA GAGAATGACGAGAGGATAGCAGCATTTCTTGTAAGACATCCAGATTTTCATATTGACCCTGTAGACAGATATGTTCCACC TGATTTTGTGACACACAGTGGTTTCTATTTCTCCAACCCAGTAAAACATTCACTGGATGGCTCATTTGCAGCACGTTTGG TACGAGATTCATAA 

Protein sequence (LotjaGi1g1v0015100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MRIEFGGAFADLLNEKGKGSGENEMGYVQRTLGFRTRELNHHDLRLVTDIVGGTIRWRRYLDHLISSLCHDKDISSMEPL LLQILRIGFYEIVKLEMPPYAVVDENVRLAKTALRPGAGNMVNGILRKLVVLKENETLPLPKVEGDDRAQARALATLYSH PWMVRRWIKCLGQEEAIKLMIWNNSEPSFSLRANSARGFSRDDLVTQLNALKVPHKLSMYLDEFVRIKTGLQIIIHAGLL KKGLCSVQDESAGLIVSIVDPQPGETIVDCCAAPGGKTLYMASHLSGQGMIYAVDVNSGRLRILKETAKLHQVDGVVTTV HADLRTLTEDSGPLKSNKVLLDAPCSGLGVLSKRADLRWNRKLEDMEQLKKLQDELLDAASKLVNPGGVLVYSTCSIDPE ENDERIAAFLVRHPDFHIDPVDRYVPPDFVTHSGFYFSNPVKHSLDGSFAARLVRDS 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 7 456 450 1.8E-253
PANTHER 7 456 450 1.8E-253
Gene3D 21 149 129 2.5E-25
PRINTS 22 38 17 2.5E-19
Pfam 26 130 105 8.4E-23
SUPERFAMILY 29 161 133 1.03E-24
TIGRFAM 34 455 422 1.5E-81
PRINTS 137 150 14 2.5E-19
Gene3D 156 455 300 3.4E-65
SUPERFAMILY 159 455 297 3.04E-61
ProSiteProfiles 179 456 278 52.564
PRINTS 239 253 15 2.6E-23
Pfam 258 453 196 2.5E-50
CDD 266 393 128 6.61524E-7
PRINTS 268 278 11 2.6E-23
PRINTS 337 349 13 2.6E-23
PRINTS 387 403 17 2.6E-23
PRINTS 414 426 13 2.5E-19
PRINTS 438 455 18 2.6E-23

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Biological process RRNA processing Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
Molecular function Methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule.
Molecular function RRNA methyltransferase activity Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a nucleoside residue in an rRNA molecule.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0015100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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