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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0016800 |
| Transcript ID | LotjaGi1g1v0016800.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RuvB-like helicase; TAIR: AT5G22330.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q9FMR9|RIN1_ARATH RuvB-like protein 1; TrEMBL-Plants: tr|K7KZ42|K7KZ42_SOYBN RuvB-like helicase; Found in the gene: LotjaGi1g1v0016800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:2138063..2141632) extracted from Lotus japonicus Gifu genome v1.2.
GAGCTCTTGCCAACTCCGGCGAGCCACCGATCGATCGCCACCGTCTTCGCCGCCGCCGGTGAGTGTGCAGTCAAATTTCA GTTACTTGTTCGGTGTAGTGAAAAACACTGCATAGAGAATGGAGAAGATGAGAATAGAAGAGGTTCAGTCCACAACGAAG AAACAGCGTGTTGCTACCCACACTCACATCAAAGGCCTCGGTCTTGAGGTTCCTTCTCTTCCTCTTCTTCTCGCTTTTCA ACCACTTTTTTTTTCTGCTTTTGTGTGTTAATTATTGCAAATTTTGAACATTGGGTTTTGCTGCTGATGATGTTGCTGTT GTGTAAAAGTGATTGTAAATTTTGAATCTTTTTGTTCAGGCGAGTGGAAAAGCATTGCCTTTTGCTTCTGGGTTTGTGGG ACAAGCAGAGGCAAGAGAAGCATGTGGTCTTGTGGTTGATATGATACGTCAGAAGAAGATGGCTGGCCGTGCACTTCTCC TTGCCGGGCCGCCGGGAACCGGCAAGACGGCTTTAGCACTCGGGATATGTCAGGAGCTTGGGACTAAGGTTCCTTTTTGC CCAATGGTTGGATCAGAAGTGTACTCATCTGAAGTGAAGAAGACTGAGGTTCTTATGGAAAATTTTAGAAGGGCTATTGG TCTGCGGATTAAGGAAAATAAGGAAGTGTATGAAGGGGAGGTGAGTTCATTGTAATTCCCTTGTTGAAACTGGGATTACA TTGTTAATGTTAATGTGGGTTGCTTTTGGAAGAATTTATTTGAGTTCATGTTATAGGATAAGAGTGTCTCGAAAGAGCTA ATGTAAATAGTTTATGACATCTAATATCTATTAGCTCTTTTGAGCTTATTTTCATAAACTCCTTGAATCATAAGCTAATT TGAGCTTATTTATTGAGCTTCTCAAACAAACTTATGGATAAACGCTAAGTTGTTTACACAAACATACTCTTGATCACTTT ATCTTCTGCTTGTTATTTTTGATATCGAGTTTTCTGATATTTTGCTGCTCTTGTGGAAGGTAACCGAGCTCTCTCCGGAA GAGACTGAGAGTGTTACGGGTGGTTATGGCAAAAGTATTAGCCATGTGATAATTGGATTAAAGACTGTGAAAGGAACCAA GCAACTCAAGTTGGACCCTACCATATATGATGCCTTGATTAAGGAAAAGGTGAGGGCTTTCCTCTTACTGTCATCTTTCT CTGTGTGTGTGTGATCCTAGGTGTAACAAGTTATGCCTTGTTTTAAAGCTATATAATATTTGTGTATATTTTCTGATGTT TTGATGTGGGATTTATGTACAATATGCAGGTAGCTGTTGGGGATGTTATATATATTGAGGCAAATAGTGGGGCTGTGAAA AGGGTGGGCCGGAGTGATGCTTTTGCTACCGAGTTTGACCTTGAAGCAGAGGAATATGTTCCACTTCCTAAAGGAGAGGT TCATAAAAAGAAGGAGATTGTTCAGGTATTTGATTAGAAGACCAATTTTATATGCATGAAACACCTCTAAAGATTTTCTA ATTTAGTATAATTATTAAATTTGAATCCCTTGTGATCAGTCTTACTAGAAACTTATATTGATGTTAAGTTCCATTTCAAG TTGACCTGTCACTGGCTTCATGTAGATGATAACATCTTCACATATAGTCTGTTTAGTTGATCCTTTGATTGGTTCCAATT CAGCATTTTGTGTGTGTATACTGAGAATTTAAGCATTTCTAGGAACTTATATTTGACCATTGAAATGAATTTTTTCATCT GCATTATAGAGGAACATGTTTGGTGGAAATACATCAATTAAATTACCCGAAGAATTAAGATGTTGCTCTGTAAAGCTTCT GAATTTAAGTTGGAGTAGCATCTACTTTTTCTTAGTTCATTCTGTCGTGATTGGACTTGCTGGGGACATCATAATATTAT TCTTCCAGACTTTAATTTATAGGACTCAAATCTTTTGGACTTGTTTTCAAGATACTAAAACATTGTGCTTAACGGTTTGA AAATAGTTGGAGGCTTGGACTCTGCTAGAATGTCTTTTAGATAGTGGGTATACTTTACTGATTTCTTACTATGATTTTGA TCGTCTTTATTTTCAAAGGACGTAACCCTACATGATCTGGATGCTGCGAATGCACGACCTCAAGGAGGGCAGGATATTCT GTCTCTTATGGGTCAGATGATGAAACCCAGGAAAACAGAAATCACCGACAAGTTGAGACAAGAAATAAATAAGGTACTGT CATAACCTGTGATGCATGTTTGTAATTTTTGGTTTCATAACTTTTGGGGGGAAATTAGGGGCCTGAAAGTGAGCTTTTTA ACTTCCTCAATTTTTATCAATTGTTCTTGGATGTATTACTTATTCTTTCATATGTTTTCTGCATTAAGTTGAAATCGGCA ATTGATGAAGTCATACTTGTGATCCTGAAAAGTGAAAACCCAATGAAAAGAAAAAGAGAGAAAATACGAAAACAGGAGGA TAGCTGACATGTTTACTACTATTTTTATGTTGGTGTCAGGTTGTCAATCGATATATTGATGAAGGTGTAGCAGAGCTTGT TCCAGGAGTTCTGTTTATTGATGAGGTGACTTTTTCACTAACTTTCTCCCTAATTATTGTCTGCAATGGCTTTTAATTAT TCAAGTTTTTATGCTTTTTTACAGGTGCATATGCTAGATATGGAGTGTTTTTCCTATCTGAATCGTGCTCTAGAGAGCTC CCTATCTCCCATAGTAATCTTTGCTACAAATAGAGGAATTTGCAACGTAAGGTATGATTAAAACTGGTGTTGGTCATAAA GAAGTTTCAGTCCAATGGTAAATTTGAAGAAATCAAATGAATGAAGTGCTTAAATATGGTTATACTGATATGGTTCCATT TTCATTCATTTCATCATTCTTATATTTCAGTACTAACTTCCCTTATTTTGATGCAGAGGGACTGATATGGCCAGTCCTCA TGGCATACCCGTTGACCTGTTGGATCGGTTGGTGATCATTCGAACACAAATCTATGGTCCTGCTGAGATGATACAGGTAA TGGATTATCATTTTTTCCAAGTCGCATTCCAATATGTCAAAGTCATATGTGTTTTCAATGTGCTAATGTACACTTTTTAC ATACGGCACAGATTCTAGCTATCCGTGCTCAAGTAGAGGAACTAGTTGTGGATGAAGAAAGTTTAGCTTTCCTTGGAGAG ATTGGACAAAGGACATCTTTAAGGTCTGCATTCTAGATTTTGGCTATTCTCTGATGTCAGTCTTTCCTATGTTTACTTAT ATTAGTTGCTTGTTTCAGGCACGCGGTTCAGCTTTTATCACCTGCCAGCATTGTTGCAAAAATGAATGGCCGAGACAACA TTTGCAAGGTAATTTGAAATTGGATAATTGGTTTTCAGGCACTTGAAACAATTTGTAAACTACATCCTTAGCTAGTTTTC TTGAACTAAATGGAGTTATTATTCTTGTGAAAATTTATAGGCGGATCTCGATGAAGTTTGTTCTCTATATTTGGATGCCA AATCTTCAGCCAAACTACTTCAAGAGCAGCAGGAAAAATACATCACATAA
CDS sequence (LotjaGi1g1v0016800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATACGTCAGAAGAAGATGGCTGGCCGTGCACTTCTCCTTGCCGGGCCGCCGGGAACCGGCAAGACGGCTTTAGCACT CGGGATATGTCAGGAGCTTGGGACTAAGGTTCCTTTTTGCCCAATGGTTGGATCAGAAGTGTACTCATCTGAAGTGAAGA AGACTGAGGTTCTTATGGAAAATTTTAGAAGGGCTATTGGTCTGCGGATTAAGGAAAATAAGGAAGTGTATGAAGGGGAG GTAACCGAGCTCTCTCCGGAAGAGACTGAGAGTGTTACGGGTGGTTATGGCAAAAGTATTAGCCATGTGATAATTGGATT AAAGACTGTGAAAGGAACCAAGCAACTCAAGTTGGACCCTACCATATATGATGCCTTGATTAAGGAAAAGGTAGCTGTTG GGGATGTTATATATATTGAGGCAAATAGTGGGGCTGTGAAAAGGGTGGGCCGGAGTGATGCTTTTGCTACCGAGTTTGAC CTTGAAGCAGAGGAATATGTTCCACTTCCTAAAGGAGAGGTTCATAAAAAGAAGGAGATTGTTCAGGACGTAACCCTACA TGATCTGGATGCTGCGAATGCACGACCTCAAGGAGGGCAGGATATTCTGTCTCTTATGGGTCAGATGATGAAACCCAGGA AAACAGAAATCACCGACAAGTTGAGACAAGAAATAAATAAGGTTGTCAATCGATATATTGATGAAGGTGTAGCAGAGCTT GTTCCAGGAGTTCTGTTTATTGATGAGGTGCATATGCTAGATATGGAGTGTTTTTCCTATCTGAATCGTGCTCTAGAGAG CTCCCTATCTCCCATAGTAATCTTTGCTACAAATAGAGGAATTTGCAACGTAAGAGGGACTGATATGGCCAGTCCTCATG GCATACCCGTTGACCTGTTGGATCGGTTGGTGATCATTCGAACACAAATCTATGGTCCTGCTGAGATGATACAGATTCTA GCTATCCGTGCTCAAGTAGAGGAACTAGTTGTGGATGAAGAAAGTTTAGCTTTCCTTGGAGAGATTGGACAAAGGACATC TTTAAGGCACGCGGTTCAGCTTTTATCACCTGCCAGCATTGTTGCAAAAATGAATGGCCGAGACAACATTTGCAAGGCGG ATCTCGATGAAGTTTGTTCTCTATATTTGGATGCCAAATCTTCAGCCAAACTACTTCAAGAGCAGCAGGAAAAATACATC ACATAA
Protein sequence (LotjaGi1g1v0016800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIRQKKMAGRALLLAGPPGTGKTALALGICQELGTKVPFCPMVGSEVYSSEVKKTEVLMENFRRAIGLRIKENKEVYEGE VTELSPEETESVTGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFD LEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRYIDEGVAEL VPGVLFIDEVHMLDMECFSYLNRALESSLSPIVIFATNRGICNVRGTDMASPHGIPVDLLDRLVIIRTQIYGPAEMIQIL AIRAQVEELVVDEESLAFLGEIGQRTSLRHAVQLLSPASIVAKMNGRDNICKADLDEVCSLYLDAKSSAKLLQEQQEKYI T
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 10 | 10 | - | – | |
| PANTHER | 1 | 400 | 400 | 3.4E-238 | ||
| PANTHER | 1 | 400 | 400 | 3.4E-238 | ||
| Pfam | 1 | 311 | 311 | 1.1E-150 | ||
| SUPERFAMILY | 7 | 382 | 376 | 3.84E-34 | ||
| SMART | 8 | 315 | 308 | 1.8E-9 | ||
| CDD | 9 | 76 | 68 | 9.69042E-7 | – | |
| Phobius | 11 | 21 | 11 | - | – | |
| Phobius | 22 | 26 | 5 | - | – | |
| Phobius | 27 | 401 | 375 | - | – | |
| Gene3D | 311 | 401 | 91 | 5.6E-30 | – | |
| Pfam | 319 | 384 | 66 | 8.7E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA helicase activity | Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA helix. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Ino80 complex | A multisubunit protein complex that contains the Ino80p ATPase; exhibits chromatin remodeling activity and 3' to 5' DNA helicase activity. | ||
| Cellular component | NuA4 histone acetyltransferase complex | A complex having histone acetylase activity on chromatin, as well as ATPase, DNA helicase and structural DNA binding activities. The complex is thought to be involved in double-strand DNA break repair. Subunits of the human complex include HTATIP/TIP60, TRRAP, RUVBL1, BUVBL2, beta-actin and BAF53/ACTL6A. In yeast, the complex has 13 subunits, including the catalytic subunit Esa1 (homologous to human Tip60). | ||
| Molecular function | 5'-3' DNA helicase activity | Catalysis of the unwinding of the DNA helix in the direction 5' to 3'. | ||
| Cellular component | R2TP complex | A highly conserved protein complex comprised of two ATP-dependent DNA helicases (Rvb1p and Rvb2p in yeast, Pontin52 and Reptin52 in humans), Pih1p in yeast or PIH1D1 in humans, and Tah1 in yeast or RPAP3 in humans. The complex associates with Hsp90 and is thought to have a role in assembly of large protein or protein/nucleic acid complexes. In this role it is involved in multiple processes such as box C/D snoRNP biogenesis, phosphatidylinositol-3 kinase-related protein kinase (PIKK) signaling, RNA polymerase II assembly, and others. |
Expression pattern of LotjaGi1g1v0016800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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