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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0305500 |
| Transcript ID | LotjaGi1g1v0305500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription elongation factor; TAIR: AT2G38560.1 transcript elongation factor IIS; Swiss-Prot: sp|Q9ZVH8|RDO2_ARATH Transcription elongation factor TFIIS; TrEMBL-Plants: tr|I1JYC9|I1JYC9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0305500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:74441916..74445202) extracted from Lotus japonicus Gifu genome v1.2.
GGAAGGAGGAAGTGGTTGTTGTGTTTGGTTCGATGGAGAAGGAATTGGTGGAATTGTATGAGGCCGCGAAGAAGGCGGCG GATGCGTCCAGTTCTTCCGATAGCGAACATGAAGAAACCCGATGCATTGATGCGCTTGAACAGCTCAAGAAATTTCCCGT CAATTACAAGATTCTTGTTAACACCCAGGTTTTTCTTTTTTCTCTCTTCTTCCTGTTACCCATTTGTTTTTTATTTTAAA TTTTGCAACTTTGGTGTTTTTTTTTGGTTGGTTGATGTTGTTTATGAAGCTGTTTTGGTTCAAAAAATCTATTTTTTTAT GTGAAATTGTTGAAATAAATTGGTGATTTGAAGGGTTGAGAGAGACTAGTGAATGCTGTGTTAGATTGTGTTGTGATGTG CTTTGTATCTTATAATGGTCAGGGTTAAATTGAAAATTGAATACATTTTGACCTGGATGAAAACTGAGATGAAAAACAGT GTTTAGCTGGTAATGTTGTTTGTTTTGGTCTGAGTTGTGCATAGAATCAGAGGAATGAGTTTGTATTTTCAGTCAATGCT GTGTTAGGTTGTGTGGTGATAGCTTTGCTTGAGGTGGACAGAAACATGTCTTTTGTTCTTTGGTGGGGGGTGGGGTGATC AATCATAATTCAAAAGGTACCTTGGGATTAGATAGCCGTGTTTTCTCAGGACGCAGTTCATGATTGGAGGGTAATGCATC AGAGAAATTGGGTCATGCAGTTACGAGGTTTGGCGGGCATGTTTAAAGTTTCGGTTATGTTTGTTTTCCAAAAAGGTTCG CTAGGGTTACGTCCACTTGGTTTTTAACTAATGATTTTAGTATCACTTTGCATGTTAACAATGAAGTTGACGTTACCGAT TGTTCCGAGGTTATCGTTCATGCATGTTTAAATTGGCGGGTGTCATTTTAGCTGGAACATGTTATTTGCTGTTGTTGGTT ATGCAATTTCTATTGGAATCTGGATCCTTTTCTTTTTCTTCAATAAATGGCATTGCCGCGTTATGAGAGAAAATGACAAA CAACTTCTAGGTAGAACCTGTAGACCTTGAATAGGGAACGGTTGGATTTGGCACTTTAGAGGATAAAGTAAGCTATCACA ACCGTTGATTGAGAAATTAACGGTTGAGATTGTGATCATATACTTGCACATGTATGACAAATTATGATTATTAGATATAC GATTTCAAGTTTTATATAATATATTGAATATATTGAATGCTTTAAGCCTTTAACGTATATTTAGAATTGTTAACTTTTAT TGTATCTAATGTGATATTTATTACAAATTTACAGCATACATTTTTAACAAGCGCTGCATGTGGCGTAGTGGCTGAAAGCT TGTTATGTTGGCAAAGGACCCTTGACTAGCCAAAACTGTTTTTTGTGAGAATCGGGTCATATGTGGAATTGAACTTGTTA AGCATGCTCTGGTTTTTCAAACCATTTCATTGAATCTCTATATCTAGAGCATTATAATCCATGGGCTTTTCTGGAAATAA ATTCATTCCTCATTTATAACATATCTCGGCTACAAAAAGATCAAATAATTACAGTATTTCACCCTAACGAGAGAAACCAC AAAGTTTTGGTCTTTGGTCTGTGTTTTGTGGTTGTTTAGTTTTATGTGTTTTAGAAAACTTTTGATGTACTTTATATCAT GACATCTGAATTAGAACTTCAATTAGAATTGTTACTTTCATATGTATTGCTGTTTTGTTGTTGTTATAAGAGGTATGATA TTATTATCCATGTTTCGAAGACACATATACATATCATTCCTTCCCCTACCAATCTTGGGAAGGATCTTGATTTTGACAAC TTTGATTCGAAACACAATGTTCAGATCATCAAATTTCTACCTTTTCCATCCCAGGCACTTTGTTAATCAAATTTATTTTT TCATTTGTTCTCCTCCTTATTCCTACCTTTTCCATCCCAGCCCCTTGCGTTTTTACTTGAAGGATATTTTAGCTCCACCT TGAACTTTATTTCTTTTCTCTTTGATGTTTTTTCCTGTCAAACTAATAAAGTGTACTACTAGGATGGGTTTGCAGGTGTT GAATATTTTGTTTTCATGTAAGAACTAGGCTATTTTAGGATAGGGAATAATTTAGTAACCTGTTCATTGGCTACTCCCTT TCTTTGTGTCACTCTGCTGCGTTTTTGGTCTTTCAGGGCTGATGCTCCACATCATTGAGAGAAAAAAAGACAAAGGGGAA ACCAAATTGATCTCAAATATGTATTTGATTGCTTTACATGTATGGTTTTACGATCTGTTTTGAATTTGTTTCTTTCTTTA TGTAATCTTTCAGGTGGGCAAACATCTTAAAGTTCTTACTAAGCATCCCAAGCCGAAAATTAAGGCTTTTGCTGTTGAAC TAATTGAGATATGGAAAGGCATAATTATCAAGGAAACAAGCAAAAATAAGAACGGGGGCTCTGATAATAAGGTTGAGTCA GCGAATGGGGACAGAGCTAAAGCTGGGAAAATGCAGAAGAGTCCCTCGGTGAAGGTTGAGAAAGGTGAAACTGTCAAAGT TGAGAAAATTGATAGGAATGGTACACCAAGGTCAAGCTCAGAAAATACAAACAAGGCACGAAATGTGGATGTCAAAATTG AGAAAACTGAACGTGCTGCTAGTGTCAAGGTGGAAAAGATAGCCAAGGAAGAAAAGCCAGTTTCTGTGGTGAAGAAAACA CCATCCAGCTCTGCCGCTCCTCCGAAGCTAACATCTATGATTAAATCTAATGACTCTGCGCGGGACAAAATAAGGGAGCT TCTCAGAGAGGCTTTATCAAAGGTCTCAGAAGAGGCAGATGGAGACATGATGGATGAAGTTAACGCGTGTGACCCTATTC GTGTTGCTGTAAAAGTGGAGTCTGTGTTATTTGAAAACTGGGGTGCTTCAAATGGGGCCCAAAAGGTCAAGTACAGGTCC TTAATGTTTAACCTGAAGGACGCGAAGAACCCAGATTTTCGAAGAAAAGTTCTACTCGGTGTTATTGAGCCGGAGCGGCT GGTCAACATGAGCACGGCAGAAATGGCCAGTGAACAGAGGAAGCAGGAGATTGAGAAAATCCAAGAGAAAGCTTTGTTTG AATGTGAGCGTGGAGCTCCACCAAAAGCTACAACTGATCAATTCAAGTGTGGTCGGTGCGGGCAAAGGAAGTGCACCTAT TACCAAATGCAGACTCGCAGTGCTGATGAACCTATGACAACCTATGTCACTTGTACTGTCTGCAATAACCGTTGGAAGTT CTGTTAG
CDS sequence (LotjaGi1g1v0305500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAAGGAATTGGTGGAATTGTATGAGGCCGCGAAGAAGGCGGCGGATGCGTCCAGTTCTTCCGATAGCGAACATGA AGAAACCCGATGCATTGATGCGCTTGAACAGCTCAAGAAATTTCCCGTCAATTACAAGATTCTTGTTAACACCCAGGTGG GCAAACATCTTAAAGTTCTTACTAAGCATCCCAAGCCGAAAATTAAGGCTTTTGCTGTTGAACTAATTGAGATATGGAAA GGCATAATTATCAAGGAAACAAGCAAAAATAAGAACGGGGGCTCTGATAATAAGGTTGAGTCAGCGAATGGGGACAGAGC TAAAGCTGGGAAAATGCAGAAGAGTCCCTCGGTGAAGGTTGAGAAAGGTGAAACTGTCAAAGTTGAGAAAATTGATAGGA ATGGTACACCAAGGTCAAGCTCAGAAAATACAAACAAGGCACGAAATGTGGATGTCAAAATTGAGAAAACTGAACGTGCT GCTAGTGTCAAGGTGGAAAAGATAGCCAAGGAAGAAAAGCCAGTTTCTGTGGTGAAGAAAACACCATCCAGCTCTGCCGC TCCTCCGAAGCTAACATCTATGATTAAATCTAATGACTCTGCGCGGGACAAAATAAGGGAGCTTCTCAGAGAGGCTTTAT CAAAGGTCTCAGAAGAGGCAGATGGAGACATGATGGATGAAGTTAACGCGTGTGACCCTATTCGTGTTGCTGTAAAAGTG GAGTCTGTGTTATTTGAAAACTGGGGTGCTTCAAATGGGGCCCAAAAGGTCAAGTACAGGTCCTTAATGTTTAACCTGAA GGACGCGAAGAACCCAGATTTTCGAAGAAAAGTTCTACTCGGTGTTATTGAGCCGGAGCGGCTGGTCAACATGAGCACGG CAGAAATGGCCAGTGAACAGAGGAAGCAGGAGATTGAGAAAATCCAAGAGAAAGCTTTGTTTGAATGTGAGCGTGGAGCT CCACCAAAAGCTACAACTGATCAATTCAAGTGTGGTCGGTGCGGGCAAAGGAAGTGCACCTATTACCAAATGCAGACTCG CAGTGCTGATGAACCTATGACAACCTATGTCACTTGTACTGTCTGCAATAACCGTTGGAAGTTCTGTTAG
Protein sequence (LotjaGi1g1v0305500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEKELVELYEAAKKAADASSSSDSEHEETRCIDALEQLKKFPVNYKILVNTQVGKHLKVLTKHPKPKIKAFAVELIEIWK GIIIKETSKNKNGGSDNKVESANGDRAKAGKMQKSPSVKVEKGETVKVEKIDRNGTPRSSSENTNKARNVDVKIEKTERA ASVKVEKIAKEEKPVSVVKKTPSSSAAPPKLTSMIKSNDSARDKIRELLREALSKVSEEADGDMMDEVNACDPIRVAVKV ESVLFENWGASNGAQKVKYRSLMFNLKDAKNPDFRRKVLLGVIEPERLVNMSTAEMASEQRKQEIEKIQEKALFECERGA PPKATTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCTVCNNRWKFC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 369 | 369 | 8.3E-137 | – | |
| Gene3D | 1 | 98 | 98 | 1.6E-14 | ||
| PANTHER | 1 | 369 | 369 | 8.3E-137 | – | |
| ProSiteProfiles | 1 | 86 | 86 | 18.69 | ||
| PIRSF | 2 | 369 | 368 | 1.2E-96 | ||
| SMART | 8 | 85 | 78 | 6.0E-20 | ||
| TIGRFAM | 13 | 369 | 357 | 4.5E-97 | ||
| SUPERFAMILY | 24 | 98 | 75 | 1.44E-15 | ||
| CDD | 27 | 83 | 57 | 5.33372E-13 | – | |
| Pfam | 34 | 83 | 50 | 2.8E-7 | ||
| MobiDBLite | 89 | 122 | 34 | - | – | |
| SUPERFAMILY | 184 | 299 | 116 | 3.4E-27 | ||
| Gene3D | 187 | 298 | 112 | 1.3E-31 | ||
| Coils | 191 | 211 | 21 | - | – | |
| Pfam | 199 | 316 | 118 | 5.5E-32 | ||
| SMART | 199 | 307 | 109 | 5.4E-40 | ||
| ProSiteProfiles | 201 | 324 | 124 | 34.059 | ||
| Coils | 291 | 311 | 21 | - | – | |
| Gene3D | 299 | 369 | 71 | 2.2E-27 | – | |
| SUPERFAMILY | 308 | 367 | 60 | 2.66E-17 | – | |
| CDD | 322 | 368 | 47 | 7.12498E-30 | – | |
| ProSiteProfiles | 327 | 367 | 41 | 14.381 | ||
| SMART | 329 | 368 | 40 | 4.8E-21 | ||
| Pfam | 329 | 367 | 39 | 8.5E-18 | ||
| ProSitePatterns | 331 | 366 | 36 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0305500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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