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LotjaGi1g1v0372100.1

Overview

Field Value
Gene ID LotjaGi1g1v0372100
Transcript ID LotjaGi1g1v0372100.1
Lotus japonicus genome version Gifu v1.2
Description Smr domain-containing protein; TAIR: AT2G26280.1 CTC-interacting domain 7; Swiss-Prot: sp|O64843|CID7_ARATH Polyadenylate-binding protein-interacting protein 7; TrEMBL-Plants: tr|A0A0L9UH72|A0A0L9UH72_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0372100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:85019498..85024066) extracted from Lotus japonicus Gifu genome v1.2.

ATTTTAATTTTTGTGTGGTGGTAGTGCTGCTATTGTGTTGTTTGTCTTAGAGGGTTTCAAACAGAAAAACACAGAGTGAG AGAGAGAGAGAGAGAGAGAGAGAAAAACAGTGGAGAAGAAAAGAAAGCTTTTGGACCCAAGAGTCATTCATACTCACAGT GTAGATGAGATAGTTCCAACTTCCAAGCTCAATTTCTCACACCCATGTCTCATCTCTTTGATTTGATTCACCAAGGTATA ATCAAACTTCTTATTGACACTCTTCCCTCAAATCTCAGATTTTTCTCTCTTCAATTTTGCAACTTTCGTCCCGTTGAATT ATTACTATTAATTAATTGGTCAATATTTCTTCAAAGTTTGAAGCTTTCATGTTGGGTGGTTGCGAATTCTGTTTTTGTAA AAATTGGGTTCATTACTTGTTATTGCTGTTCGAGAAAATTGGGTTTTGTGGGTTGTTGCTGTTTGAGAATTCTCTGTATT GTATTGAATCTTTGAATTTGTTCTGTAACATTTTCAATTTCTTACTTTGAAAATTTTAAGGTTTTAACCATGTCCTGTTG TGTGCTACTAGTTCTGAAATTAGTCAATGTTATCCAAAAGCTTATTTGTTATTTGTTATTTGTAAGAGTTGCTATAAGTT CCGTAACGCTTGCGTTGTTCCTCTTTTGTTCAATTTAGCTTTGTGGGATTCACTTCCAGGTTATTTATAGTGATGAAAAT GAAAATGGCTAGCTATAGTTGCTTTCAGTAATGTTCAAAGTTCAAACACCTAATTATGCATATTATATTGCATATCAGTA GTAGGTTTCCAAAAATAGTTGTACTGCATTTCTTATTGAGTTATTTGCTTGGGTAGTACTGAAATTATTTATCTACTATA TGATGTATGAAATATGTGGTTAACTTTTTGTTTTTTCCCCTGTTCTTTTAATAGCAGTCTAGTTGATCAGTGAGTGTGAT CAAAATTAACCATTTTCAGGATTTGGCTGAAGCTATCTGGACATGTGCTGTTACTTTTTTTAGAGCATGTTTGTGTTTTG GTTATTTTGTCCATATTCTAGTTAAATAATGAATGTGTCCAAGAAAGGATTCCAAATGGATGCAAAGCTATTCAGCCCAA ACAAGGCAACTAGTCTGAATCCAAATGCAGCAGAGTTTATTCCTTTTGCCCTCAGATCACCATCATCTGGAACTACCAGC TCGGCAGATGCAACAGCAAAGCTTACTACTTTTGGAGCTCATGGGAAATCAGTTTTAGGCAGATCAGAATCATCCAATTC AAATAACTCTGATGATGAGGTGCACCAGTACTGGCGATGTCAGCTCCCTGATGATATAACCCCTGATTTTGAGGTCATGG GAGAAGATGAGTCTCAAGGTGTTAATGACCTTTCTTTGATAGGTTTGTCCATACATGATGACAATGAAACCTCAACGTTT CCTTCTTCAATAGGAAATCGATATAAAATAAATGAGCAGGAGGAATTATCTCAACAGCATTTTAATGGCAACAACTTTGC TGATAAATTCAAGCTCTCCAATTCAAGCTACAGTGAGGACCCGTCTTCTGCCAGCTTTTTGAACACTTTGGCAAAGCCTT GGGATAGGCCAATTGGGAGTGTCAACCAGCATATTAGCAGTGGTCTAGAGGGGCTTAATTCTGATGACAACTCTAGACAT GGATTCTTAGATGATGTTTTGGCTGAGAATGCAATTGTGGATGACACTAATTTGAATCCTTTGGAATTTCTAGCTTCTCT GTTTCCTGGTTTTGCTGCAGAAAGTCTTGCAGAAGTTTACTTTGCCAATGGATGCAATCTGCATTTGACCAGTGAGATGC TCACTCAGGTAGAGGTAGATTGATCTTAATATAATAACTGCCTTGTGGTACCTTATAAGCCTCATAATTTACGCCTGCCT GCGAAAATGTATAGGTTGGCACTTACATTTATACACACTATATATCTCCTATCTTGTTACAATATATTATAATAATAAGT CTGATGGGATGGATGCGAAGTATTTAGAGCGCTACCTGTGCCTTGTTTTGGCAGGTTGTGAAGTGATTCAAGTACAATCT AGCTTCGAGTTTCAAATTGCTGTGGCCTGGTACTGGGGAGAGGGATTTTTTAGAGATTATCTTACTTTTCAGTTTTGATC TTCGCTCTTTCTGAGTTTAGTTATGAGATGATAGTCCTCTACTTCATGTTAACTAGGGGCCATTGCAAATTAGTAACATT TGTTGTGTCCGTCTGCGTATATATACTTTTCTTGGTATACAATCATATAGTACAATTTGTTCTTTCTGTGGATGGCGTTG TCATCTCGTATCATTATTACTTATTTCTTTTAAATCCTTCTTGAACCATGAACTTTTTGTTGATCAACTCTGTATTTCCA CCTTCCAAATTTGTAGCTTCAAGATGATGGCAGTTTCAATCAGAATCCGAATTCCAAGACTCTTTCAGCTCCCAATCTCA GTGCAATGGACTTCCCTGCACTTGCTTCATCAGATGGCCAGACTGCTTCTACAAAATATGGCGTAGATAATGTCTATCGA AGTGGAAATCCTTACCGATCATCTGACAATGACATGTTGTTTTTCAAATCAAGGTCTTCAGTTCCATCTAGAGGTGCTAT TGACTTTGCTGCAGCTTCTAGGAAGTTGGCTTCTCAGGATTCTGGTGTTTGGAAGTATGACAGAAATGGCTTTGGTGATA CTGCTATTGGCTCGACTAGGAGTTCAAATGTTCTGGCTAGTGGCTTCACTAGTGGACAGGGGAGAGTCAACTCTGGCGAT CGGTTACAGAAGCGTGGGTCAGCTCGGGAAGCTGCTGTTTGGTTGGAAACTGGTGATTTAGTTGGTAAATAATTATATTA TATGGTTCGTTTTTGGGACAAATTCTTTATACACTCTTTTCTTTAATAACTTTCCATTGCAGCTAATATGCATTCAGAGC TACGGGAAGAGGCTTGTGATCATGCACGCTTACGCAATGCATATTTTGAACAGGTGGGTATTGGATTCATGCTTTGATGT AGTTATCTGAATGAGAATATGAAGTAATGATTTTGTTGGCTATGCGCTTCTTGCTTGGTTCATATTGACACATTCACTTG ACTTTTTCTCCTCCTTTGAGATTGCCTTTGCTCTTCCTTTATTTTCCAAATAATTTGTAACTAAGTTGGCAAAGGATTAG GGGTTAGATTTAACAAGAGCTGTTAGGCTGATACCAACATATACTGGAGTAAACAACAAAGTCCCTCTCCTCTGTCTTCA GTCTGTTATTGTGTGAGCTTAGATATTCTATTTTTAGTTTAATTGGCTTCGAATGGGAAAACAGGCACAACAAGCCTATC TTATTGGCAATAAAGCCCTAGCGAAAGAATTAAGTGTTAAAGGGCAACTGCATGACATGCATATGGAAGCAGCTCATGGA AAAGCTCAGGAATCTATTTACCACCAGAGGTTTGTTGTTCCTCAATGCTTTGATTCTTCCTCATCATGTGAGTTTCGTTC TGAAAAAAGATTACATGATACATTGATATGAGAAAGTGTTGAATTTACAGAAATCCAGTTGCTCCAGAGATGCGGGGCAA TGGAAGGGGGCATGAGAGGATAATAGACCTACATGGGTTGCACGCTAGTGAAGCCATTCATCTGCTGAAACATGAATTGA GTGTGCTAAAAAGCACCGCCATGGCTGCTGGGCAGCGTTTGCAGGCTTACATTTGCGTAGATACAGATCATCATACCTGG GCTTCCCACACTCCTGCTAAACTTCCATTAATTGTACAGCGTTTTCTGCTTGAAGAGGGCCTTGAGTTCACGGTACCTCA GTCAGGCCTACTTTGTGTTGTGATATAATGAGCGAAGGCTATGTTAAGGATGTATACATGTTTTTTGACACAGTAATAGT ACAGTCCATGAACATAGGGACATTGTAGTCGTTCTTGTATATCTGTATATGAGAAATAGTGGCAGTGTCCAAGCCTGAAC AAGAAAAAGAAAAAAAAGAAAGAAAGAAGGGTTGTAGCAGAATTGTATCATTAGCATGAGATATACAATTAGTCTTATAG GACTTCATCAACCGTTGTCAGGGAGCATTTTCCTTCTGTTAATTTGTACCCTAGTTTTCATTTCCTTGTTATATCTTACC CTTCTTTATGATTCAGATGTAACTCAGAAAATGACACCATAGAACAGTAGCCTTTCCGAATTAGATTCACATCTTGCAAC AAATACCAAGCATGAATGCACTGATCATGATATTGCTACATTCCTCAATGTTTGTGTTTCAGTTTTAAAAATGTAAACGT ACTTTTAAAAATAAGGAGGTGAGCTCTTTCCACGATAATGGCTCTTGGAGTGACAAGATCAAAAGTGAATTAACCAAAAA CACAGTCAAACTATCTTCGGAATTTGCGTTAGACAGAAATTACACATTCTAAGGGCATGTTTGGTCATAAGTGCAAAACA AATGACTTTGGTCATAAAATTTTAGGATGTGTTACCGTTAGTTCCTTCCGCCAGTTTTTTGTCCAATTTGTACTCCCTCT CTCTGAACC
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0372100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAATGTGTCCAAGAAAGGATTCCAAATGGATGCAAAGCTATTCAGCCCAAACAAGGCAACTAGTCTGAATCCAAATGC AGCAGAGTTTATTCCTTTTGCCCTCAGATCACCATCATCTGGAACTACCAGCTCGGCAGATGCAACAGCAAAGCTTACTA CTTTTGGAGCTCATGGGAAATCAGTTTTAGGCAGATCAGAATCATCCAATTCAAATAACTCTGATGATGAGGTGCACCAG TACTGGCGATGTCAGCTCCCTGATGATATAACCCCTGATTTTGAGGTCATGGGAGAAGATGAGTCTCAAGGTGTTAATGA CCTTTCTTTGATAGGTTTGTCCATACATGATGACAATGAAACCTCAACGTTTCCTTCTTCAATAGGAAATCGATATAAAA TAAATGAGCAGGAGGAATTATCTCAACAGCATTTTAATGGCAACAACTTTGCTGATAAATTCAAGCTCTCCAATTCAAGC TACAGTGAGGACCCGTCTTCTGCCAGCTTTTTGAACACTTTGGCAAAGCCTTGGGATAGGCCAATTGGGAGTGTCAACCA GCATATTAGCAGTGGTCTAGAGGGGCTTAATTCTGATGACAACTCTAGACATGGATTCTTAGATGATGTTTTGGCTGAGA ATGCAATTGTGGATGACACTAATTTGAATCCTTTGGAATTTCTAGCTTCTCTGTTTCCTGGTTTTGCTGCAGAAAGTCTT GCAGAAGTTTACTTTGCCAATGGATGCAATCTGCATTTGACCAGTGAGATGCTCACTCAGCTTCAAGATGATGGCAGTTT CAATCAGAATCCGAATTCCAAGACTCTTTCAGCTCCCAATCTCAGTGCAATGGACTTCCCTGCACTTGCTTCATCAGATG GCCAGACTGCTTCTACAAAATATGGCGTAGATAATGTCTATCGAAGTGGAAATCCTTACCGATCATCTGACAATGACATG TTGTTTTTCAAATCAAGGTCTTCAGTTCCATCTAGAGGTGCTATTGACTTTGCTGCAGCTTCTAGGAAGTTGGCTTCTCA GGATTCTGGTGTTTGGAAGTATGACAGAAATGGCTTTGGTGATACTGCTATTGGCTCGACTAGGAGTTCAAATGTTCTGG CTAGTGGCTTCACTAGTGGACAGGGGAGAGTCAACTCTGGCGATCGGTTACAGAAGCGTGGGTCAGCTCGGGAAGCTGCT GTTTGGTTGGAAACTGGTGATTTAGTTGCTAATATGCATTCAGAGCTACGGGAAGAGGCTTGTGATCATGCACGCTTACG CAATGCATATTTTGAACAGGCACAACAAGCCTATCTTATTGGCAATAAAGCCCTAGCGAAAGAATTAAGTGTTAAAGGGC AACTGCATGACATGCATATGGAAGCAGCTCATGGAAAAGCTCAGGAATCTATTTACCACCAGAGAAATCCAGTTGCTCCA GAGATGCGGGGCAATGGAAGGGGGCATGAGAGGATAATAGACCTACATGGGTTGCACGCTAGTGAAGCCATTCATCTGCT GAAACATGAATTGAGTGTGCTAAAAAGCACCGCCATGGCTGCTGGGCAGCGTTTGCAGGCTTACATTTGCGTAGATACAG ATCATCATACCTGGGCTTCCCACACTCCTGCTAAACTTCCATTAATTGTACAGCGTTTTCTGCTTGAAGAGGGCCTTGAG TTCACGGTACCTCAGTCAGGCCTACTTTGTGTTGTGATATAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0372100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNVSKKGFQMDAKLFSPNKATSLNPNAAEFIPFALRSPSSGTTSSADATAKLTTFGAHGKSVLGRSESSNSNNSDDEVHQ YWRCQLPDDITPDFEVMGEDESQGVNDLSLIGLSIHDDNETSTFPSSIGNRYKINEQEELSQQHFNGNNFADKFKLSNSS YSEDPSSASFLNTLAKPWDRPIGSVNQHISSGLEGLNSDDNSRHGFLDDVLAENAIVDDTNLNPLEFLASLFPGFAAESL AEVYFANGCNLHLTSEMLTQLQDDGSFNQNPNSKTLSAPNLSAMDFPALASSDGQTASTKYGVDNVYRSGNPYRSSDNDM LFFKSRSSVPSRGAIDFAAASRKLASQDSGVWKYDRNGFGDTAIGSTRSSNVLASGFTSGQGRVNSGDRLQKRGSAREAA VWLETGDLVANMHSELREEACDHARLRNAYFEQAQQAYLIGNKALAKELSVKGQLHDMHMEAAHGKAQESIYHQRNPVAP EMRGNGRGHERIIDLHGLHASEAIHLLKHELSVLKSTAMAAGQRLQAYICVDTDHHTWASHTPAKLPLIVQRFLLEEGLE FTVPQSGLLCVVI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR46651:SF1
1 573 573 3.1E-254 –
PANTHER
PTHR46651
1 573 573 3.1E-254 –
CDD
cd14371
222 262 41 1.16637E-14
IPR041806
SMART
SM01162
412 477 66 8.6E-19
IPR013899
Pfam
PF08590
415 476 62 2.7E-16
IPR013899
Gene3D
G3DSA:3.30.1370.110
460 573 114 1.5E-12 –
SMART
SM00463
490 573 84 0.0022
IPR002625
SUPERFAMILY
SSF160443
491 572 82 1.57E-6
IPR036063

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0372100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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