Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0417200 |
| Transcript ID | LotjaGi1g1v0417200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Receptor-like protein kinase; TAIR: AT2G23770.1 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein; Swiss-Prot: sp|O64825|LYK4_ARATH LysM domain receptor-like kinase 4; TrEMBL-Plants: tr|A0A0B2PYX6|A0A0B2PYX6_GLYSO Leucine-rich repeat receptor protein kinase EXS; Found in the gene: LotjaGi1g1v0417200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:91121432..91124077) extracted from Lotus japonicus Gifu genome v1.2.
TCTTCTGCAATAAAAATCACATATTATCAACCCTTGTTCGAACTGGTCAGCAAAACTCTACGTTATCACCTTCCATTTTT CCCACCTTCTAATTCCTCAACGCGTTATTACTTAATTAAAAATCTTAATCCATGGTATATTCCATTAATTATGCTACGAC ATTTTCACATCTAGCAACTATTACTCAATATCCTAGACAATTTTTGTTCCATTTCATTATCAGAAAAACAATCACAGCAT GGATCTTGCTATGTTTCTTCTCATTGTTCTCACTCAAAGCTTTCTTCTATGCTCAAATGCAACTGCAAATCAGAATTACT CTGGGAATTCAATACTGAGGTGTAAAAATGACACCACAGATTTCCTCTACACCTGCAATGGCGTCCAAAAGTCCTGCATC GCCTTCCTCATTTTCAAATCCAAACCTCCTTACACCACCACCGCCACAATTTCCAACCTCACTTCATCAAACGCAGAAGA ACTCGCCGGAATCAACACCGCCACAAATTTTCCCACTGGTAAAGAAGTAATTGTTCCTGTGAACTGTTCTTGTCAAACAA AAGACTACTATGAAGCTGAAACCAAATATGTTTTACCACAAAAACCAACGTATTTCACAGTTGCTAACAACACCTATCAG GGGTTGTCCACTTGTGATTCTCTCATGCATGCAAATCCTTATGGGGTGCTTGATCTGCTTCCTGGCATGGAACTCAAAGT GCCACTCAAGTGTGCTTGTCCAACAAGGAATCAAATCATGAATGGCGTCAAGTATTTACTCACTTACCCAGTGAATTGGG GTGATAATATTTCTTATCTTGCACAACGGTTCAATCTTTCTGCAGATAGTCTAGTTGATGCCAATGGTTTTTCCTCTGAA ACTGAAATTCTGTATCCATTCACAACTGTTCTGATTCCTTTGCCAACTGATCCCACCAATTCATTGACCATAGTTCATGA AGATCAACCACCCACTTCACCTTCTCTTGTTTCCATTGGAAAAAGCACAAATAGATTGAAACTTGTCGTTGCAGTAGCCA CCACAGGGAGCTTCATGCTTGTTCTCTGTTTCATTCTAGTTACTCTTTTTCTACTCAGAAAGAGAAGAAGAGCAAGGTTC TTTAAGCGAGGCGCAAAAGGTAAAACCGTGCCAGATTCTTCAGAAGATCTTCGTGACGAGATTGCATGTATTGAGCTTCT CTCCAAAGTGTACAAGTTCGAGGAAATCAAGGAAGCGACAGAGAATTTCAGTTCAAAAAACAGAGTAAAAGGCTCTGTTT TTCGTGGCATGTTTGGTTCTGAGTCTAAAAAAGGCAATCTCACCTTGGCTATCAAGAGAATGAATTCAGATGCTTACAAG GAAGTGAATTTGCTGGGGAAAATCAATCATTTCAACGTGATAAACCTCAAAGGTTACTGTGAAAACGATGGCTTCTTCTA TCTTGTTTTTGAGTACATGGAAAATGGCTCTTTAAGAGAATGGCTTGGGAAATCCATGTCCACAGAGCACAAAAGCTGGG TAAAGAGGGTTCAGATTGCTCTGGATATTGCAAATGGACTTGATTATCTTCTCAATTTCACAGAGCCTTGCTATGTGCAC AAGGATATTAGCACTGACAACATTCTGCTAAACAAAGATCTGAGGGCAAAAATAGCAAATTTTAATCTTGCTAAAGAATC AGAGAAGGATGTAACATCTGGTTCTCACACTTCACATGTTGTGGGAACCAGGGGTTATATGGCACCAGAGTATTTGGGGG CAGGGCTAGTCACTTCCAAAATGGATGTGTATGCTTTTGGAGTGGTGCTGTTGGAATTGGTCACAGGTAAAGCTTCTATT ATTGAGCAAGATGGGAAAGAAGTGATGCTTTCAGCAATGATGGTTAATCTGATTGATAAAGATGATGATGATGCAGAAGA GAAACTTGGTTTGTTCATTGATCCTCGCCTCATTGGGAATAGTGGGAAAGTGTGTGGTGTTCAGCTAGTTAGAGTGAGCC TAGCATGCTTGATGGAAGAACCTGCAAGGAGACCAAACATGGCAGAGGTTGTCTCTAGCTTGTTGAAAATATATGCAGAA ATGGACAGAGGAATATCACCAGGAACCTATGGCAGTCCAAGCATGGAGAGGTGAAATAGTGTTATTACATCTATCCTCCC CTCTGGTTCGAGGCGTGAACATCCATATCCTAAGGAGTTAATTCCTTCGGTGAATTATTTTCATACTCGGACATGATACC TCATTTAAGGTGAATCTAGTATATGTAACACTCAAACCATTTTAAAAGCTGAAATTTTCATTCTTCTTTGGTTTGAAAAA ATATTTCATCATCTATGTTTTTCATTTTATGTTGTTTGATAGCATCTACAATAAAATACTTTATGTCGTGAAGTTAGTTG ATGTAGAACAATCCAAGCAAGGTACTTTGTTGATGATATAGAGTACTATTTTAGGAAAGGGTGATCTTCCAACTCAAATA TTAGATAATTATTAAATTTTTTTATTGAAGAAAACTCAATCACATATGTTTAAAATGAAATTTAAAGACTTAATAAAGTA ACATCTGGTGGTTCTGTCCTCCACTTTGAGGGCCAGTTCGAGGTGTGAACATCCATACCCCCAGGGGATTAACTCTCTCA GCGAAG
CDS sequence (LotjaGi1g1v0417200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCTTGCTATGTTTCTTCTCATTGTTCTCACTCAAAGCTTTCTTCTATGCTCAAATGCAACTGCAAATCAGAATTA CTCTGGGAATTCAATACTGAGGTGTAAAAATGACACCACAGATTTCCTCTACACCTGCAATGGCGTCCAAAAGTCCTGCA TCGCCTTCCTCATTTTCAAATCCAAACCTCCTTACACCACCACCGCCACAATTTCCAACCTCACTTCATCAAACGCAGAA GAACTCGCCGGAATCAACACCGCCACAAATTTTCCCACTGGTAAAGAAGTAATTGTTCCTGTGAACTGTTCTTGTCAAAC AAAAGACTACTATGAAGCTGAAACCAAATATGTTTTACCACAAAAACCAACGTATTTCACAGTTGCTAACAACACCTATC AGGGGTTGTCCACTTGTGATTCTCTCATGCATGCAAATCCTTATGGGGTGCTTGATCTGCTTCCTGGCATGGAACTCAAA GTGCCACTCAAGTGTGCTTGTCCAACAAGGAATCAAATCATGAATGGCGTCAAGTATTTACTCACTTACCCAGTGAATTG GGGTGATAATATTTCTTATCTTGCACAACGGTTCAATCTTTCTGCAGATAGTCTAGTTGATGCCAATGGTTTTTCCTCTG AAACTGAAATTCTGTATCCATTCACAACTGTTCTGATTCCTTTGCCAACTGATCCCACCAATTCATTGACCATAGTTCAT GAAGATCAACCACCCACTTCACCTTCTCTTGTTTCCATTGGAAAAAGCACAAATAGATTGAAACTTGTCGTTGCAGTAGC CACCACAGGGAGCTTCATGCTTGTTCTCTGTTTCATTCTAGTTACTCTTTTTCTACTCAGAAAGAGAAGAAGAGCAAGGT TCTTTAAGCGAGGCGCAAAAGGTAAAACCGTGCCAGATTCTTCAGAAGATCTTCGTGACGAGATTGCATGTATTGAGCTT CTCTCCAAAGTGTACAAGTTCGAGGAAATCAAGGAAGCGACAGAGAATTTCAGTTCAAAAAACAGAGTAAAAGGCTCTGT TTTTCGTGGCATGTTTGGTTCTGAGTCTAAAAAAGGCAATCTCACCTTGGCTATCAAGAGAATGAATTCAGATGCTTACA AGGAAGTGAATTTGCTGGGGAAAATCAATCATTTCAACGTGATAAACCTCAAAGGTTACTGTGAAAACGATGGCTTCTTC TATCTTGTTTTTGAGTACATGGAAAATGGCTCTTTAAGAGAATGGCTTGGGAAATCCATGTCCACAGAGCACAAAAGCTG GGTAAAGAGGGTTCAGATTGCTCTGGATATTGCAAATGGACTTGATTATCTTCTCAATTTCACAGAGCCTTGCTATGTGC ACAAGGATATTAGCACTGACAACATTCTGCTAAACAAAGATCTGAGGGCAAAAATAGCAAATTTTAATCTTGCTAAAGAA TCAGAGAAGGATGTAACATCTGGTTCTCACACTTCACATGTTGTGGGAACCAGGGGTTATATGGCACCAGAGTATTTGGG GGCAGGGCTAGTCACTTCCAAAATGGATGTGTATGCTTTTGGAGTGGTGCTGTTGGAATTGGTCACAGGTAAAGCTTCTA TTATTGAGCAAGATGGGAAAGAAGTGATGCTTTCAGCAATGATGGTTAATCTGATTGATAAAGATGATGATGATGCAGAA GAGAAACTTGGTTTGTTCATTGATCCTCGCCTCATTGGGAATAGTGGGAAAGTGTGTGGTGTTCAGCTAGTTAGAGTGAG CCTAGCATGCTTGATGGAAGAACCTGCAAGGAGACCAAACATGGCAGAGGTTGTCTCTAGCTTGTTGAAAATATATGCAG AAATGGACAGAGGAATATCACCAGGAACCTATGGCAGTCCAAGCATGGAGAGGTGA
Protein sequence (LotjaGi1g1v0417200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDLAMFLLIVLTQSFLLCSNATANQNYSGNSILRCKNDTTDFLYTCNGVQKSCIAFLIFKSKPPYTTTATISNLTSSNAE ELAGINTATNFPTGKEVIVPVNCSCQTKDYYEAETKYVLPQKPTYFTVANNTYQGLSTCDSLMHANPYGVLDLLPGMELK VPLKCACPTRNQIMNGVKYLLTYPVNWGDNISYLAQRFNLSADSLVDANGFSSETEILYPFTTVLIPLPTDPTNSLTIVH EDQPPTSPSLVSIGKSTNRLKLVVAVATTGSFMLVLCFILVTLFLLRKRRRARFFKRGAKGKTVPDSSEDLRDEIACIEL LSKVYKFEEIKEATENFSSKNRVKGSVFRGMFGSESKKGNLTLAIKRMNSDAYKEVNLLGKINHFNVINLKGYCENDGFF YLVFEYMENGSLREWLGKSMSTEHKSWVKRVQIALDIANGLDYLLNFTEPCYVHKDISTDNILLNKDLRAKIANFNLAKE SEKDVTSGSHTSHVVGTRGYMAPEYLGAGLVTSKMDVYAFGVVLLELVTGKASIIEQDGKEVMLSAMMVNLIDKDDDDAE EKLGLFIDPRLIGNSGKVCGVQLVRVSLACLMEEPARRPNMAEVVSSLLKIYAEMDRGISPGTYGSPSMER
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 23 | 23 | - | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| PANTHER | 7 | 618 | 612 | 3.4E-272 | – | |
| PANTHER | 7 | 618 | 612 | 3.4E-272 | – | |
| Phobius | 7 | 18 | 12 | - | – | |
| Phobius | 19 | 23 | 5 | - | – | |
| Phobius | 24 | 261 | 238 | - | – | |
| Gene3D | 169 | 239 | 71 | 2.0E-6 | ||
| ProSiteProfiles | 181 | 226 | 46 | 10.267 | ||
| SUPERFAMILY | 181 | 227 | 47 | 7.19E-5 | – | |
| CDD | 182 | 226 | 45 | 0.00642103 | ||
| Pfam | 185 | 227 | 43 | 0.0017 | ||
| Phobius | 262 | 286 | 25 | - | – | |
| TMHMM | 264 | 286 | 23 | - | – | |
| Phobius | 287 | 631 | 345 | - | – | |
| ProSiteProfiles | 289 | 613 | 325 | 30.054 | ||
| Gene3D | 302 | 406 | 105 | 2.6E-12 | – | |
| SUPERFAMILY | 322 | 608 | 287 | 1.37E-58 | ||
| Pfam | 345 | 608 | 264 | 1.4E-37 | ||
| Gene3D | 407 | 620 | 214 | 1.7E-49 | – | |
| ProSitePatterns | 452 | 464 | 13 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein kinase activity | Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Protein phosphorylation | The process of introducing a phosphate group on to a protein. |
Expression pattern of LotjaGi1g1v0417200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…