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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0492900 |
| Transcript ID | LotjaGi1g1v0492900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Smr (Small MutS-related) domain protein; TAIR: AT5G23520.1 smr (Small MutS Related) domain-containing protein; Swiss-Prot: sp|Q86UW6|N4BP2_HUMAN NEDD4-binding protein 2; TrEMBL-Plants: tr|K7LFV6|K7LFV6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0492900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:100641347..100645609) extracted from Lotus japonicus Gifu genome v1.2.
GGATGAATAAGTCTATACAGTACAATATAAGAATTAATTGTATTTACTTAATGCTTAATATGACGTACCAAACCAACGAT AAAAACAAAACAAAACCGGTACCTGAGAATTGAAATCAACCAGGGCCAATTTCGTAAATTCAAAGGTTAGCGGCGGCTTC AACTCTCTCCAATCTCCATATTTGTGGCTCCTGGGAGACCCTTTGCGAGGAAAAACGAGAGAAAAACCCAATTTTTCTTT GTTCTTCCAATCTTCGCAATCCTCACAGAGCAAATTTATGGATAACAGGAGCAAAATTGGTTCACTGCAACTGAGTTTCA TCGCAAAATTCTTCCAGCAATCGGTGTTTGGTTTTGTAGTTCCATCGCTATTTCAACCCCTCGATAGATCCATTCCTTGG TTAAGGTTTCTGGGTTTTGGTCTTCCTGAATAGCATTCAAGCTACCCTTCTGTCTCGTGTTACATTTTCTGCAAAAATCA AGGTTAGTTTTCATCTGGGTCTTCTTCTTTCAGCTCAAAATTTATTCTTTCTTTTCTCTTTTTCAAATTTAGTTTCTGGG TTTTTCTGGCATGATGTGTGATGTTGTATCTTGTTTTGAGTTGTGGTTGCTTTGAATTCTCTGTTTTTGCAATTTACATG GTTTAATTTTAGAATTTAGCTTTTTAAATTATGACTTTGAAATATTAACTATTTAATCAGATTATGTTTTTTATTTATTT TCAATGTATTATACAGTGATTGGCTCACATACTGGCACGTGATATGATGCACAGTGCTTACAGTTGTTGACTTGGAATTT TTGCAATACAGGTTCCAGATTGTGGCTTCTTGAGTGTTTTTGCATTTGCACAAGTGTTCAGACAGAGAGATAGCAAAGTG ATTGGTGTTCAAATTATGGTGTTTGGACTAAGATGACCATTTTAGCTGGATCTTCGACTAAGAAGATGTCGTCGGCTAGG GGTCAATCCTCTGGTTGGGCAGCTTTTGATCTCAAGCAGAGAAAGAAGAACAATCTGGAGTCTGATGCTGATAAGGACCC TTTCCCAGCTTTAGGAACTTCGAGTTCTATGCAACATGTTGATAATAAGTTAGCCAAGAAGAATCGTGTTCCTTCGAAGC CTTTCTCTTCGGTGATTCTCCCTGCTAAAAATTTCCCTCCATTGAAGGAGGGTGGGAATGGCAAAAAGACCATGTTAGTT TTTGACTCTACTGAAAAATGCCATGGGAATACTGTGCAGGGAGATGTTAATTTAGCTATCAAAAGGCTAAAAGAGCAGCA TCTTTGGGCTGAGAATAGCTTGATAGAGGATATATTGGCTGCTGTTGATAATAATGTTAATAAGGCCTCAGCTTTATTGG AAACAATGGCCTCTGCAGTCAACTTTGAAGATAATAATGTATCAAGTGATCCTAGAGCAACTACTTCGGATGATATTACT GATGAAAGTCTCACTTTAGAAAATGTTAAAGATGACATTCCCTTCCGCTCTAATCTTGTTAGTCACCTCCAAGATAATGA TGAAGACTCAGAGGTTAGAAATGCTTCCTCAGATCAAAAGTTTTCTGGTGTTGATAACCTGAGGTTCAAAATGAATATCC TGTATTCTGTTCCTGTTGAGCCTGAATGGGAGGATGATGATGTTTACAATAGTCATCGAAAGGATGCATTGAGGACAATG AGGTATGAGTGCTCATTCATGTATTCTTTCTTGAGATGGTATTAATTACTTTATGACTTGCTTGTATGTGTTTGTTTTGA AAAATCATTTATTTACCAGCATTTTCCTCTCATGTAATATATATGTTTCTTCCCCCTTCCTTCGTTATCTACTCTTGTAT AAGATGATGTTGCGAAACATGTACACCGAGGGATGAAATCTACGCGCAGTGAAACATATTGATCATGCTACTGTTGAGAA ATTCTCTTGCCTATTGTTAACTTCTGATCTGCATGTTTCCTACTTCCTAAACGTGATGGATATCTTAGACTGCATTATAT ATGTTATGCCTTTGTTTCATGTTCTTTTTTTCCGGTGTGAAGTAGTGGTGGTGAAATTCTTGACTTAGTTCAGCCTTATC ATGAGTTTTTCTAACCAAACTGATTGCAATTTAATTGACAATGTGAGCCAGTTCCTATCTTCTTATCTGTTACATTGTAC CCATATTGTCTTTAGGTCTATGAACTCTTTGAAATGTGCTAAGAGAAACAATTATGTAATCTGAATCAATGAAAATAGCA TCATTGAACTTGTTGAGATTTGGTTTTGGATTTTCAATTACTTTTCGAGAAAGAGCTTTACCCAGTTCTGATTTTATGTG ATAAAGTTTACAGTTCTGTGTGTTCTTTTAGATACTCCTTCAGATTTGAAGGGTCTATTGAGACTTTATATCCTATCAAT TGAACAGGTCTGCATCGCGACATTCTAGGGCAGCTGCTGGTGCTTTTCTAAAAGGTGATCATTATTCTGCGCAGCAACAT TCAATGAAAGCTCGGGAGGAATGGCATGCTGCTGACAAGCTTAATACTGAGGCAGCCACAAAAATTTTAGGTATTAGGAA TAATGAAAATGATATATGGAAACTGGATTTGCATGGTCTTCATGCAGCAGAAGCTATTCAAGCATTACAAGGACATCTCT ATAAAATTGAAAGCCAAGGCTTCCCAAAGAATACAGCCACTTCAAGTGTGAAGGAGAATGGGCTTGCACATTCAACTATC AGATCTCTTAATGTCACAAACAGGGAAAATTTGGATAAACAAGCGCCATTAAGGCTTAGGTCATCAGCTTTACATGTCAT AACAGGTATTTTTGCTTCTTCTTGACCTTGGATATCATACAAGATGTCTACGTAAGTGTTATGTACACTTTCACTGGTCT TGGGATTCTATTATAAGTCATAACTAAGCCCATTATCATTCTCCTGAATGTTCCTTTCAACTTTTTACTGCTGATCATTC TCTCTTGCTAATTGTTTCTTTGAAAAATTTATAAAAGAGGAATATCTGATAAAATTATGGACAATGAAGGAACAACATGT AGTGGTTCATTGAAAAAATGTGGCTTATGATTATTTTGTCCAAAGAATTTCTCCTTTGGTATCTGTTGGCACCTTTGGGT TATTTTAGTTATTGAAGAAATGATCGATTTTCTGAAATACAAAGTTTAGATTTTGATTATTTATTAAGTAAACAAGTATG AAGGGGAGCCGTGGTGCAACAATAAAAAGATGATGCCATGTGACTGAGGTCACAGGTTTAGGTCCTGGAAAAAGTCTCTT GTGTAAAAAACAAGGTTAGACTGCGTACGATAGACCTTGTGGTCGGACCCTTCCCCGGACCTTGCGCACAACATGAGTTT TAATGCACTGGGGTGCCCTTTATTAAGTAAACCTGTATCCGTTCATGGAGTCAGCAATCAGCTTTAAGGATGGCCATAAT TATTGCCTTTTTGTTGCTACAGGTATTGGCAACCATAGCCGAGGACAAGCTGCTCTTCCTTCTGCTGTGAGAAATTTCCT CATTGAAAATAGGTGGAACATCTTTCCCTTCAGTATATTATCTACACTCATGCTCCCTTCCCATGCTGACTCTTAAATAC TCCTTTTCCTTCGTTGAGCGCACTGAAAAAGAAGAAAAAGGGAATATACCTTGGTTCTTATTATCTTTTTTTTTATATCC AACCTTGGTTCTTATTATCTTGTATGTTCATTTGTTTTGTTCTGCAGATACCGTTTTGAGGAGACTAGACCAGGAGCGAT CACAGTGTGGCCCAAGTTTCGTCAAAGTTGATTGCTAACCCCATTAGGAACATATTCTTGTATTGTACCATTGATTGCTG ACATGGGGATCATAAATATAGAACTATGTATACTTTGTGTGATTTGTATCATGTAATTTTTGTCAAAGTTTGTATTAGTT GATCATGTCCATCTGCATTCAACAGCAGTGAGATTCAGTTCCGCATGTATTACATTTATTCTAACCTATTTATGTAGAAT AAGGTATTTATCTTGGCTTTGGAAATGAGCAAGTTATTTGAAGTTTTTCAGATGGAGATTCTTATTTCAGAACTTAAGAC ATAACACCCCATTCAATAATTACCTCTACTTGGTGCTTTTGGAAGAAAACCAACATTAGCATTGCCACATGTATACAATA TTTATTTATGACATATTTTGTTGTCAAATCAAATATGATAGCTAGCACTTTTAATAAAGAAAATTCTTAGAGATCGATAA ATGACAACTTTATATAGTGCGGA
CDS sequence (LotjaGi1g1v0492900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCATTTTAGCTGGATCTTCGACTAAGAAGATGTCGTCGGCTAGGGGTCAATCCTCTGGTTGGGCAGCTTTTGATCT CAAGCAGAGAAAGAAGAACAATCTGGAGTCTGATGCTGATAAGGACCCTTTCCCAGCTTTAGGAACTTCGAGTTCTATGC AACATGTTGATAATAAGTTAGCCAAGAAGAATCGTGTTCCTTCGAAGCCTTTCTCTTCGGTGATTCTCCCTGCTAAAAAT TTCCCTCCATTGAAGGAGGGTGGGAATGGCAAAAAGACCATGTTAGTTTTTGACTCTACTGAAAAATGCCATGGGAATAC TGTGCAGGGAGATGTTAATTTAGCTATCAAAAGGCTAAAAGAGCAGCATCTTTGGGCTGAGAATAGCTTGATAGAGGATA TATTGGCTGCTGTTGATAATAATGTTAATAAGGCCTCAGCTTTATTGGAAACAATGGCCTCTGCAGTCAACTTTGAAGAT AATAATGTATCAAGTGATCCTAGAGCAACTACTTCGGATGATATTACTGATGAAAGTCTCACTTTAGAAAATGTTAAAGA TGACATTCCCTTCCGCTCTAATCTTGTTAGTCACCTCCAAGATAATGATGAAGACTCAGAGGTTAGAAATGCTTCCTCAG ATCAAAAGTTTTCTGGTGTTGATAACCTGAGGTTCAAAATGAATATCCTGTATTCTGTTCCTGTTGAGCCTGAATGGGAG GATGATGATGTTTACAATAGTCATCGAAAGGATGCATTGAGGACAATGAGGTCTGCATCGCGACATTCTAGGGCAGCTGC TGGTGCTTTTCTAAAAGGTGATCATTATTCTGCGCAGCAACATTCAATGAAAGCTCGGGAGGAATGGCATGCTGCTGACA AGCTTAATACTGAGGCAGCCACAAAAATTTTAGGTATTAGGAATAATGAAAATGATATATGGAAACTGGATTTGCATGGT CTTCATGCAGCAGAAGCTATTCAAGCATTACAAGGACATCTCTATAAAATTGAAAGCCAAGGCTTCCCAAAGAATACAGC CACTTCAAGTGTGAAGGAGAATGGGCTTGCACATTCAACTATCAGATCTCTTAATGTCACAAACAGGGAAAATTTGGATA AACAAGCGCCATTAAGGCTTAGGTCATCAGCTTTACATGTCATAACAGGTATTGGCAACCATAGCCGAGGACAAGCTGCT CTTCCTTCTGCTGTGAGAAATTTCCTCATTGAAAATAGATACCGTTTTGAGGAGACTAGACCAGGAGCGATCACAGTGTG GCCCAAGTTTCGTCAAAGTTGA
Protein sequence (LotjaGi1g1v0492900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTILAGSSTKKMSSARGQSSGWAAFDLKQRKKNNLESDADKDPFPALGTSSSMQHVDNKLAKKNRVPSKPFSSVILPAKN FPPLKEGGNGKKTMLVFDSTEKCHGNTVQGDVNLAIKRLKEQHLWAENSLIEDILAAVDNNVNKASALLETMASAVNFED NNVSSDPRATTSDDITDESLTLENVKDDIPFRSNLVSHLQDNDEDSEVRNASSDQKFSGVDNLRFKMNILYSVPVEPEWE DDDVYNSHRKDALRTMRSASRHSRAAAGAFLKGDHYSAQQHSMKAREEWHAADKLNTEAATKILGIRNNENDIWKLDLHG LHAAEAIQALQGHLYKIESQGFPKNTATSSVKENGLAHSTIRSLNVTNRENLDKQAPLRLRSSALHVITGIGNHSRGQAA LPSAVRNFLIENRYRFEETRPGAITVWPKFRQS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 20 | 20 | - | – | |
| MobiDBLite | 1 | 56 | 56 | - | – | |
| PANTHER | 6 | 432 | 427 | 4.0E-144 | – | |
| SMART | 244 | 309 | 66 | 4.7E-10 | ||
| Pfam | 245 | 308 | 64 | 2.6E-9 | ||
| Gene3D | 293 | 352 | 60 | 5.7E-5 | – | |
| SMART | 313 | 429 | 117 | 1.3E-5 | ||
| SUPERFAMILY | 314 | 428 | 115 | 8.63E-12 | ||
| ProSiteProfiles | 316 | 429 | 114 | 19.549 | ||
| Pfam | 316 | 412 | 97 | 1.4E-6 | ||
| Gene3D | 358 | 427 | 70 | 1.9E-11 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0492900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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