Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0730600 |
| Transcript ID | LotjaGi1g1v0730600.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Elongation factor Tu; TAIR: AT4G02930.1 GTP binding Elongation factor Tu family protein; Swiss-Prot: sp|Q9ZT91|EFTM_ARATH Elongation factor Tu, mitochondrial; TrEMBL-Plants: tr|A0A1J7HTE2|A0A1J7HTE2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0730600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:130245596..130249381) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCCACAACGCTCGCTCTCAGAAACTCCTCTTCTACCTGTAGGAGACACCTCTCCTATCTCCCATTCTCCTCTCACAT CCTCCACTCCTCTCTCTCCTCTTCCCCTCTCTTCAATGACACTCCCTCCTCGTTCTCATCACCTTCTTCCTCCAACCCGT GGTGGAGATCCATGGCCACTTTCACCCGAACGTAACCCTCTCTCTATAACTCTTCGATTTTCTGAATCGCCAGATTTTTT TTGTGATATTTTTTTTTTTGGTTACAGGAAGCCTCATGTTAATGTGGGAACTATTGGGCACGTTGATCACGGGAAGACAA CGCTAACTGCCGCAATCACCAAGGTTTACTGCAATTTCAACTCAAAAAATGAACCAGATTTTGAGGCTTTAGGTTATTTT ATTTGACATTATTTGTATTTGTACAGGTGCTTGCTGATGAAGGGAAAGCGAAAGCTATTGCCTTTGATGAAATTGACAAG GCCCCTGAAGAGAAGAAGAGAGGAATTACCATTGCTACTGTGAGTACTTGTTTTGCGCTTTTTATTCATTTAATTTGGCA TTTCAATGAATTGTGATTTTTTTGTTTTGTTTCTATGTATCGCTGCTTTGTTTGAGAAATGGACTATTTGTCTTGATGAT TGGATTTTCAGGCACATGTTGAGTATGAGACTGTGAAACGGCATTATGCACATGTGGACTGCCCTGGACATGCTGATTAT GTTAAGGTAAGCTGAAAATTTGGTCTCATTTCCCTAAAAATAGAAAGTTGCTTGTAATTTCTAATTATCTTGCAACAGCT GAGTGGTTAAGTTTAAGAAGTGACTATTGAATTATTAGACCTAGGATTGTTGATGGGTTTAGGTGGTAGAATGAGATTAG GTTAATTTAACTGACAGTTCTCATTTTTGAATGTACATTATTTATTTGTTGAATGTGGAATTCATCATTTTGGGTGCTTG AATATCTTCATCTTCTATTCACAAATGGGATGGAAAAAGCATAATATGTCTTCTGATTACCAAAATGCTTTATTTTAAAA AATGACAATGAAAAAAAATTACACGAAAAACTTGCCACTGTGTAGCTGTATTTCTCAGATAACTTCTATGTCTTCTGAAA TTAGTGCATTTAGCATTCCAGCATGGCTTGATGTACCTACAGGTTGTTTGTCTAATGGTTTCTTCACTGTAAATGACAAA TTCTTCTTATTCATCTGCTACACTGTTGCATTGGTTATGTTTCTGCAACTGTGCTTGTTTAGTTATACACAATTACACAT ACCTAATAAATGTTTGTTTCACAGAATATGATTACAGGAGCTGCCCAAATGGATGGTGGTATACTAGTTGTATCTGCACC TGATGGACCGATGCCTCAAACCAAGGAGCACATTCTTCTTGCTCGCCAAGTAGGTATTTTATTAAGTTGGTTTGTAAGTA ATTGAAGCATATGTTTAGGTCTCCAGTTGCTTCCTTGCTTCTAGGTTAATGAACTTGTTATCTTTAAATGAATTGTGCAG GTTGGTGTGCCATCTCTTGTGTGCTTCTTAAATAAAGTTGATGCTGTCGATGATCCAGAATTGTTAGAACTTGTAGAAAT GGAGCTCCGCGGTAGGGTGTTTCTCAAAGACTTCACCTTCCTTCCTAATTCATACTTTCTAAAAGAATGCATCTGCATTA GTTCCTGTAGTCCCCATCATGTTTAAAACTTCAAGGTGTATTTATGTTCATTATGTATTCGGCAGAGCTTCTGAGCTTCT ACAAGTTTCCTGGGGATGAAATCCCTATCATTAGAGGTTCAGCGTTGTCCGCTTTACAGGGTACAAATGACGAGATTGGT AAAAAGGCTATTCTAAAATTAATGGATGCTGTAGATGAATACATTCCTGACCCTGTGCGCCAGCTCGACAGACCTTTTCT AATGCCAATTGAAGATGTATTCTCCATTCAGGTAAATGGGCATGGACTTCTTCTGTTTGTTTTTTTTTTTTTTGAAGAAT GCCTACTCATTGAAGTGAAGATGAGTTTGTTAATTTTTTAGTCATATGTTACAGAACCTTGCGTTGACACTGGCATTTAT CTAGTTTCAATCACTTGATACTTTAAAAAAACTAAAAAAGTGTTTCCTCTTTTTTTTTTCGCTTCTATTTTTTTTAACTT GTGTATAAAAAATTATGTTCTTCAATGCTGTTATGAGTCCACAAAATCTGCATTGATTTCCTCTGGTTTATAGGAAAGAA ACATCATAGTTAAAAGCAATGCTATCCAGAATGACACTTTGGCTGCTTAATATTTGTAATTTGTGTTAAAGGGACGAGGA ACAGTAGCTACTGGCCGTGTTGAACAAGGGGTAATCAAAGTTGGTGATGAAGTTGAGGTTTTGGGTCTCATGCAGGTATG CTAGTTCAGTCATTTTCTGGTTTTAGGCTGCCACCTGATTCTCATCATTCCTGGGAATTAGTCTATTGTTCTGTTTCAGA AGTATCGATGAATTCTTTGCATTGTAATAATGGTTATTCCTGACACTGAGCTTTCCTTGGTAGGGTGGTCCTCTAAAAAC AACAGTAACTGGAGTGGAGATGTTCAAGAAGATTTTGGATCAAGGACAAGTAAGTTAGTATCTTCACCTATAAGGGCTAT TCGTATAGTATTATGAACTAACGATTTCAAAATCTTATGCTATTTGATTGAAGTATGTGAATGGTTTTTATATCCGACAC ATCCTCTCATCCAAGAGCTTGTTGGGTTTAAAGAGTGAACAATGTACAGATTCTTCTTGTATTGAAATTTAACTTTTTAT TTTAGAAGAATGAGGTTGAAAAGGATCTAATGCTAGACCACTTGGTCATGGATACAATGCCATAAACTAATTATGTCTAA AGGTTAAGCTACTAGAGTAGAACATATGAATGGTTTTATGAGCCCGTTTGTATGTGGACCAAAGAGCACTTTTAAGAGCT TATTTAGTGTTTTTTATAGTAGATACTAGATAAGCTCCAATAAGCCTGTCTCCAAACAGCTTCATAATCTAACACTGCAT ATGCTAAACTAATGTGGATTTTTACATTTCTTAGGCCGGTGATAATGTTGGTCTTCTTCTCCGTGGTCTGAAACGTGAAG ATATTCAACGTGGTCAGGTTAGTTGCAGTGATGAAGCTTTTTCTTATTTTTTAGACCTTGTTGCAATTTGCGAGGGAACT GTATCTTATCTGTATTTGTTTCCATAAGAATTGTCGAGTTTAGATTCAAACTACGAGGGTTGAGAAACAACTTTCCTAAC ACTACGTTGTATTGAAAAGGTCATTGCTAAGCCTGGTTCTGTAAAAACATACAAGAAGTTTGAGGCAGAGATTTATGTGC TCACAAAGGACGAGGGAGGGCGACACACTGCTTTTTTCTCTAACTATAAGCCTCAGTTTTACTTGAGGACTGCTGATATC ACTGGATCAGTAGAGTTGCCTGAAAATGTTAAAATGGTTATGCCTGGAGACAACGTTACTGCCACATTTGATTTGATTTC ACCAGTTCCACTTGAACCAGGTCAGTATGTCTCAATTTAATGAAAAAAATTGTTTCTACATGATTTTCAACCACCATTCA TATGTCATCCATACACTGCAATGTTATCCTCACCATATGCTGTATATTTTGTACACTTCATGCTGGAGTGTCAAAACTGG AAAGTTTAGTTTATGGCTTGCTATTGATTTTACAGGACAACGATTTGCCTTGAGAGAGGGTGGGAGAACAGTTGGTGCCG GTGTGGTGTCAAAAGTAGTGAGCTAA
CDS sequence (LotjaGi1g1v0730600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGCTGTAGATGAATACATTCCTGACCCTGTGCGCCAGCTCGACAGACCTTTTCTAATGCCAATTGAAGATGTATT CTCCATTCAGGGACGAGGAACAGTAGCTACTGGCCGTGTTGAACAAGGGGTAATCAAAGTTGGTGATGAAGTTGAGGTTT TGGGTCTCATGCAGGGTGGTCCTCTAAAAACAACAGTAACTGGAGTGGAGATGTTCAAGAAGATTTTGGATCAAGGACAA GCCGGTGATAATGTTGGTCTTCTTCTCCGTGGTCTGAAACGTGAAGATATTCAACGTGGTCAGGTCATTGCTAAGCCTGG TTCTGTAAAAACATACAAGAAGTTTGAGGCAGAGATTTATGTGCTCACAAAGGACGAGGGAGGGCGACACACTGCTTTTT TCTCTAACTATAAGCCTCAGTTTTACTTGAGGACTGCTGATATCACTGGATCAGTAGAGTTGCCTGAAAATGTTAAAATG GTTATGCCTGGAGACAACGTTACTGCCACATTTGATTTGATTTCACCAGTTCCACTTGAACCAGGACAACGATTTGCCTT GAGAGAGGGTGGGAGAACAGTTGGTGCCGGTGTGGTGTCAAAAGTAGTGAGCTAA
Protein sequence (LotjaGi1g1v0730600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDAVDEYIPDPVRQLDRPFLMPIEDVFSIQGRGTVATGRVEQGVIKVGDEVEVLGLMQGGPLKTTVTGVEMFKKILDQGQ AGDNVGLLLRGLKREDIQRGQVIAKPGSVKTYKKFEAEIYVLTKDEGGRHTAFFSNYKPQFYLRTADITGSVELPENVKM VMPGDNVTATFDLISPVPLEPGQRFALREGGRTVGAGVVSKVVS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 204 | 204 | 1.2E-129 | – | |
| PANTHER | 1 | 204 | 204 | 1.2E-129 | – | |
| SUPERFAMILY | 13 | 109 | 97 | 1.08E-32 | ||
| Gene3D | 14 | 144 | 131 | 3.4E-53 | – | |
| CDD | 19 | 107 | 89 | 1.10766E-50 | ||
| Pfam | 33 | 103 | 71 | 1.5E-18 | ||
| Pfam | 108 | 202 | 95 | 5.5E-31 | ||
| CDD | 110 | 199 | 90 | 2.95267E-58 | – | |
| SUPERFAMILY | 113 | 203 | 91 | 1.06E-35 | ||
| Gene3D | 148 | 203 | 56 | 1.3E-27 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi1g1v0730600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…