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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0747900 |
| Transcript ID | LotjaGi1g1v0747900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger matrin-type 2; TAIR: AT3G05760.1 C2H2 and C2HC zinc fingers superfamily protein; Swiss-Prot: sp|Q96NC0|ZMAT2_HUMAN Zinc finger matrin-type protein 2; TrEMBL-Plants: tr|I3SLF9|I3SLF9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0747900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:132053079..132056910) extracted from Lotus japonicus Gifu genome v1.2.
GAGAATCGAACTCACGACCTCTCGCACCCGAAGCGAGAATCATACCACTAGACCAAACACCCAACTTGTTTCTCAATTTC GCAAATTTCTAATTAGAAACTAGCTTTATCCCCTCTGTTCTTCCATTCTCGAAGTTCAAGACTAGGGTTTCTTCAACATA ATACTCCTGATTCAACCTAACTTTTCTCTCTTCTCCTTCGTCCCATCGATTATCAAGCCATCATCGTTCAAGACTAGGGT TTCTCTAAAGTTTATTTCTTCAATCGCGTCAATGTCTAACAGCAACAATGTAAGTGCAGAATTTAATCCCCAAATTCTTG TCAATTTTTCTTTCCCTCATCATCTTGTTCTTCTTCTGATTACCAATTTGAATCGCTTGAATCAGGCCGCTGGGGTTGAC AATACTTTCAGAAGGAAATTTGATCGAGAAGAGTATCTCGAACGAGCTCGCGAGCGTGAGAGAGAGGTCAGTTATCGCTT ATTGGTGTTCCTTTGATGTTGATTTATGCTTTTTCGAGTTTTTGATTGATTAGGGTTTTCAATTGTGCGAACAGGAGGAA GAGGGTGGTAGAGCAAAACCTAAATGTAAGTCTTTTACATTACTATACATGCTTCGATTTGCACTTAACATTGCAATTGA ATAGTGAATAACATCATCTTTCTGGTTTCAGCTAAAGGTCCTCCAGTGCAGAGGAAGCCCTTGAAGCATAGAGATTTTGA AGTAGACCTCGAATCCCGATTGGGCAAGACTCAGGTATGTTTCTGCGGAACCAATGTCAATGCTCTAGCTAGTTATAAGT GAATGCCAAGTATCTATAAGAAAACTTGTGAAAAAGTTTGTAGCAATCTATGTTTGTAGGACATGAGGGTTCATCTACTG GTAGCAAATTTTTGTTGTATCATATGATGTTGCTTTGTACTGATGACAGGTAATCTTTTGCAGGTTGTTACACCGGTTGC ACCACTAAGTCAGCAGGTATCTATTTTCCTTTGTTTTAGATTTCTATTTATCATTCCAGTACTTTTAAATTTGAAAAAAG ATGTTCTTTTCTCATGTTGACTGTTTGTCGAAATTTAAGTTTCTGTCTTCAACATCTATTTCTTTCTCCTGGGGACGTGT CACGGGTGATTTAAATGTTTATGCTGAGCACTAGCAGTATACTTTGTTGGTTACACATAGGGGAACTTCTTTCATTGAAT TCCAAAGTTTACCAAATTCATTTGGAACCCAAATTGATGTCTCTGCAGTTAATCTGATGTCAGTTTTGTTCATGGCTAAT CTTGTTTAATTTTGAGTATTGACATGTATTTTTGTACCAATTTATCAATTCTTGCTATAAAATCATGTTAATTGCGAAGA GATCCAATCCACGTTGTTACCGAAATCTCCTAAATAAAGTCTGGCATTTTATAAGTCTTTTGTACCTCTGTTTGAAATGT ATTGCATTTTCAATTCCATTGACATTCTCCACTCTTATTTCTATGACACGTGAAACTACCTTTTGGTGCATGTTTTGAAT TTAGTTCCCTGGTTCAGTAAGAATATGGCTTTATTTAGTTTAGGCCTTTTGGAACCCCAACTGGGCTTATTAATATGATA AAATCTGATCCTAGTGTGTAATATCATCTGAAACTACACATGAATCATGACACATAAAATAAGATGGAGAAGGTAGTGGC CTTGAAAATGAAACTAGCATCCTTGTTTCCTCTTGCATATTGAACTTTTCAGCCTTGTTGGTATGTTATTATGCGCTACG GAGTACGATGAGTAGAACCTTTCATTGCCTTGTTTCTTCTGACTGCCACATATTTTGTATCTTCTGATATCCAAGTCATA TTCGATCTATATCCCCACCCTTTTTTATTATTAAATTAGGAAATGGAATTGAGTAACAAATCCAAGCAAATAATTTAACT TTCTTTTTCTTTGTTTACAAAGTAACTTTTATCAACTGACACTATTTTATAGAAATAATTCATTCAATTACTTCCAAACC AAAGTATACTTGGACGTGTTTTTGTTATCTAATCTTTTGTTTTTTTTACATTTTAAATTAATATTGCAGGCTGGATACTA CTGCTCTGTTTGCGAGTGTGTTGTAAAGGACTCTGCAAACTATCTGGATCATATTAATGGAAAGAAACGTATGTACTCTT TTACTCTTGTCTCTTTTGATTTTCTGTGTATATCTTGCTTTAATTTCCTTCACTTAACTCATGGTTACTCTTGCATTGCC TCTCAGACCAAAGAGCCTTGGGCATGTCTATGCGAGTCGAACGTGCTTCTCTCCAACAGGTACATCATGAATAACTTTCT AATACCTATAGCTCAAATGACAATATAAGTACCTTTGACATTGCATGAATTATGTATTTTTTCCACATGCATGCACACAT GTTTTTCTTTATGTGTCATATAGTTTCTGTAGTTGTATATGTGTGTCTGCCTGACCCTAGTCAATCTTTTAATGAAACAC AGGTTCAGGATCGGTTTGAAGTTCTGAAGAAACGTAAAACTCTTGGCAGCTTCACAGAGCAAGGTAAAGCCATGGCTTTT TTATTTCTTAAGATTAGAACCATTCAACTAGTTTGTATATTGTGTTTTTCCCTTTCTTTGCCTGGAATTATAGAAGATCA ACTGTTCTTTCATTTAAGATCGCTGATGGATCTTGAACTAAATTTTTTGGGGAGCCATATGTCAACTTGGTAATATTTTA ATGAGTTTAGTTTCTTAAATACTCATGTGAAACCTTTAAAGATTTTCAGGTTATATGATATTTCCAATATATTTAAGGAG TGATACGCAGTTTTTAAAAGTTTTCGACCATTCATGTGGAATTTTCAAATTTTGGCTGTCCCCCCTTCCCCCAATCACGC ACACTAACACCAATCCACACTAAAGCCAGCCACTGTTTAACATGGTCTTGGTCCTTGAATGTGGAATTAACTCTGTACTT CTTCACAGATCTTGACGAACGCATTTTAAAACAGCAACAAGAGGAGGAAGAACGAAAGCGACTTCGTCGGGAAAAGAAAA AAGAAAAGGTCAGGATTGTGGATAGTTGCTCAAGACTTTTTTTGTCTCCTTCCTCCCATTTCTGTTTAATTTTTGTACTT TCATATTGCCATTAAAAAAGTTATTTTTAACCTCATTTTAACTGTTAATACTTAATAATTGCATCCATCTTTGTCAAAAT AATGTTCATGTTACTTTACTTAGTAAATATTGTCTTTATTTCTTGTACAAAGTAGTAATAAAGTACTGTTAAATTTTTGA TTCAGAAGGAGAAGGCTGTGGAAGAACCTGAAACTGATGCTGACGTTGCTGCCCTGATGGGATTCGGTGGTTTTCGGTCA TCTAATAAGAAATGATTACATTCTACATGTGGGATGGCTGTATGTGAAATTTCGAGTAACTATTCTGCAATTTTAAGCTG AATTTGGTTACTTAGTACCTGATTCTGGGTTGGCTTAAACATGAATCTATGGTGAAAAGTAACAGTGGGGCTCAAACATT TGTTTCGTTTACTTGTACATTTGTTCTGATAGCTAACCTGATGTCCTGATGTATCATATGAGCTTTGATTCTTGTATTCT TTACTAATATTATATGGTGGTGGAGGACAACTCCCTAGCTCATAGAAATCCATGGTTATGAGCAGTGGATGTAATTCTAT AGTGTTAAGCTATATTTTAATTGAGAGTAGTTCTATTTGGTACGATATGAAAGTCACGACCAGTAAAGGCAACATTCTGA TTTTTTTAAAAGATAAATACATATTTAAAAGGCAAAATTATATTGAGATAGTTTTCAGCTGCCTGAAACAAC
CDS sequence (LotjaGi1g1v0747900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTAACAGCAACAATGCCGCTGGGGTTGACAATACTTTCAGAAGGAAATTTGATCGAGAAGAGTATCTCGAACGAGC TCGCGAGCGTGAGAGAGAGGAGGAAGAGGGTGGTAGAGCAAAACCTAAATCTAAAGGTCCTCCAGTGCAGAGGAAGCCCT TGAAGCATAGAGATTTTGAAGTAGACCTCGAATCCCGATTGGGCAAGACTCAGGTTGTTACACCGGTTGCACCACTAAGT CAGCAGGCTGGATACTACTGCTCTGTTTGCGAGTGTGTTGTAAAGGACTCTGCAAACTATCTGGATCATATTAATGGAAA GAAACACCAAAGAGCCTTGGGCATGTCTATGCGAGTCGAACGTGCTTCTCTCCAACAGGTTCAGGATCGGTTTGAAGTTC TGAAGAAACGTAAAACTCTTGGCAGCTTCACAGAGCAAGATCTTGACGAACGCATTTTAAAACAGCAACAAGAGGAGGAA GAACGAAAGCGACTTCGTCGGGAAAAGAAAAAAGAAAAGAAGGAGAAGGCTGTGGAAGAACCTGAAACTGATGCTGACGT TGCTGCCCTGATGGGATTCGGTGGTTTTCGGTCATCTAATAAGAAATGA
Protein sequence (LotjaGi1g1v0747900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSNSNNAAGVDNTFRRKFDREEYLERAREREREEEEGGRAKPKSKGPPVQRKPLKHRDFEVDLESRLGKTQVVTPVAPLS QQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLQQVQDRFEVLKKRKTLGSFTEQDLDERILKQQQEEE ERKRLRREKKKEKKEKAVEEPETDADVAALMGFGGFRSSNKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 56 | 56 | - | – | |
| PANTHER | 4 | 201 | 198 | 6.3E-87 | ||
| MobiDBLite | 13 | 42 | 30 | - | – | |
| Gene3D | 79 | 118 | 40 | 6.7E-7 | – | |
| SUPERFAMILY | 80 | 122 | 43 | 7.94E-9 | ||
| SMART | 82 | 116 | 35 | 2.0E-9 | ||
| Pfam | 85 | 110 | 26 | 1.5E-6 | ||
| Coils | 148 | 180 | 33 | - | – | |
| MobiDBLite | 154 | 183 | 30 | - | – | |
| MobiDBLite | 154 | 184 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | MRNA splicing, via spliceosome | The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. | ||
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Cellular component | Spliceosomal complex | Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0747900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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