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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0081600 |
| Transcript ID | LotjaGi2g1v0081600.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FACT complex subunit SSRP1; TAIR: AT3G28730.1 high mobility group; Swiss-Prot: sp|O04235|SSRP1_VICFA FACT complex subunit SSRP1; TrEMBL-Plants: tr|I1J7R6|I1J7R6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0081600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:22249439..22255186) extracted from Lotus japonicus Gifu genome v1.2.
TGCGCACCGGAAAAATTGGGTACGCGGGCGGTGCGGTGTGGGTACGTAAATTGGGTACTTTGATGCAAAAATTGGGTAAT TTTTTTACCAAATTAACTAATTAAAATACTATTAATATTTATTTACCCCTAAATTTCACCTCTTAGTCTCTCACGTTCGC AGTTCAGTTTCATGCCGTTTTGCTCTTCTCTCTCCTCACGTACGTGAACTGCTCTCAACCTCTCACCACCGCAAGCCATT TTTCTCACCAACGCACGTCGTTTTTCCGCCACTATACTTGAAGGTCCTCTACTGTGCTATTTTATGTTAGAGGTTTGATT ATACCCGCACCGGGTACCGTGAATCCTAGACGGAAACCCAACCTTTTTTTATCTGTGTGTCTATCTACTCTAATCAGTAA TCACAACACATTCTGGTTCCTCTGATTTGCAGCAATGACGGGCGGTCATGGTCATCTCTTCAACAACATCACCGTCGGAG GCCGCGGCGGCACGGTCAGTTCTCTCTCTCTTCCCGTTTACTCGAAAATACTGATTTCCGTCAAACCCCTAATTTTTTAT CCTTCGATTTTGCTTTAAAAACTTCCATCAAAACCCTAATTGAAAACTTGTATGGGTTTTGTTCTTTTTATGGGGTTGCA GAATCCAGGCCAGATAAAAATACATCCTGGAGGAATTGTATGGAAAAGACAGGGGGGTGGTAAATCAATTGAGGTTGATA AAGCTGATATAATGGGGGTCACGTGGATGAAGGTTCCAAGGTCTAATCAACTTGGTGTTCAGATCAAAGATGGCTTGTTC TACAAGTTTACTGGATTTCGTGATCAGGTTAATCTTGTGCATTTACTAATTCTGTTCCTTTTATTAACTCTTCAATAGAT GTTAATATTGATTAGTTGGACTTGGATTGCTATTCAATTTTATAAATATTTTGCAGGATGTTGTAAGCTTGACCGATTTC TTCCAAAACATGTTTGGAATAGCTGTAGAGGAGAAGAAGCTTTCTGTTAGTGGGCGCAATTGGGGAGAAGTTGATCTAAA TGGTTGGTGATATTTCCATGAACTCACTTATGTCTTGCAATATGCAACTGATATTATCTACATGATACACTGCATATATC TCATACATCTCCCTTTGTTATTCTTACTCGCTATACTTAAAAAAAAATTTGTTTGGGGATAAGAGTTTGACATCATGTTC TGTTTGATGTATCAGCATCATGAGGATATAGTATGTAAGCAAGGGAAAGATGTTTCTTATTTTTAAAGGAAGTCAGTTGA TATCATTCAGTTTGTCTTTCGAGATTTCTTGTATAATGCAGGATGGCTTTAGTATGTGAAGAAATGGGGTGAATTTGCTG TTACTTCTTTTTAACCAATTTGAAGTTTGTTCTTTTCTTTTTGGTGTACTCTAGGTCCACAATAAATCTAAGCACCAATA CCTCCAATTTGGTATGTACATGAAGTGAAACCTTAAAGTGAAAAAGTTAAGATCGGAAAGCGTTTTTCGTTTTGGGGGGC GGGGGGTGGCTTCTAAAACCGGAATTTCATCTTATTCTTGTTTTCATCTTTTGCGAATTAAGTTCAGTCTTTCCCTTTGT GGTGAAACGTTGTCTTTGATTGACTTCTTTTATACAGTCATACTACCACTAGATATTCTTATGCTTCTAGTTCCATTTCA GGAAATATGCTTGGTTTCATGGTTGGTTCAAAGCAAGCTTTTGAGGTATCTTTAGCGGATGTCTCTCAAACACACCTTCA AGGGAAAAATGATGTGTTATTGGAGTTCCATGTGGATGACACAACTGGAGCTAATGAGGTATATCTGTATATTACATACA CATAAAATCTTATATGTTTTAACAAATTCATACAGTTCCCTCACCCAAGCTTGGCTTGAACAGCAGGCTGCAGTTTATAG GTTCTATTTGGGTGTGCTTTTATTTATGGTCTAATATATTGTTCATGTTATGATCTCAGAAAGATTCATTGGTGGAGATA AGTTTCCACATACCAAATTCCAACACCCAGTATGTTGGTGATGAAAATCATCCTCCTGCTCAGGTGAGTTTGCTCAAAAC TTTTATAAGTTTCATGTTACAGTAATTAGTAACTTCCAGACAACTGACGTTTGCACATTCTTTTTCGCTTCAGGTTTTCC GTGATAAAATAATGTCTATGGCTGATGTTGGTGCTGGGGGTGAAGATGCTGTTGTTACATTTGAGGGTATTGCAATCCTT ACCCCAAGGTGATACCTTTCAAATAATTGTCTTGTATATTGATGGCTTGCTTTTCTGTCCTTCCAAGAAAAAAGATCAAT CCCTATTAATGCGATTTTTTTTTTGTGCAGAGGACGTTACAGTGTTGAGCTACACCTGTCATTCTTGCGACTTCAAGGAC AGGCTAATGATTTCAAAATCCAGTATAGCAGTATCGTTCGCATATTTTTACTTCCTAAGGTTTATTTGCAGATCATTTGT TTTCATTTCACTGATATTGTTTTCATATAATTTAGTGCAATCACCAAACCATGTCTTATAGTTGATGCTTTTTTCTAGAC TTGTTAAGTATACTGACAACTTCTCATCTCTACTGATTGTATTTATCCGCAGTCTAATCAGCCACATACATTTGTCATTA TTAGTCTTGATCCCCCTATTCGGAAAGGACAAACTTTGTACCCTCATATTGTGATGCAGGTAATTGCCTTCTGTTTAATT TTTAACAATTTCGGTGATACACTGATACGTATTTTGCTTGCTTCTGAACCTGACAATTTTTTCTCATTTTTGTATAGTTT GAAACTGATTTAGTTGAACAAAGTGAATTGGCAATAAATGAAGATCTTTATAACACCAAGTACAAGGACAAGTTGGAGCT TTCATATAAGGTATTTCTTAAACTGTTGATAACTGATTCAACGATATGCTGCTTGTGTACAAAAAAACTTACTTTAGTTG ATTGATGAATAAAAAATTTCCTAACTAGGGGTCTTGCATAGAAATGCAATTGCTGATATAAATCACTTACAATTCAATAA TCAGGGTCTGATCCATGAAGTGTTCACCACAATATTACGCGGCTTGTCTGGGTCCAAAGTTACCAAGCCTGGAACATTTA GGAGTTGTCTACATGGTTATGCAGTGAAATCATCTTTGAAAGCGGAAGATGGAATTCTGTATCCCCTTGAGAAGGGCTTC TTTTTTCTACCTAAACCCCCCACTCTTATTCTTCATGATGAGGTAAAATCGAATTTTTTATTACTGATGGTCAGATATCG TCTAGCTACTTTTGACGTACAAAATTACATATAATGTTATACGTTGGAGGTTTTGATTTTTTTTTTTCATCCTTTCCTAC TAGATTGACTATGTGGAATTTGAGCGGGGTGGTACAAATATGCATTATTTTGACCTTCTTATCAGACTAAAATCTGAGCA AGAGCATCTCTTCCGTAATATTCAGAGAAACGAATACGACAATTTGTTAAGTTTTATAAGGTATATTAGCTCTTTGCCAA ATTTTACATAGTTACAACTAATTGTTTGATTTAATTTGATGAACAATTAATTGTTGTCCTGTGCACATAGGTCAAAGAGT TTAAAAATTATGAACTTAGGAGGTGCCCAGCCAACTGTTGGTATGGCTCAGGTTCTTGAGAATGATCATGATGATGCTGT TGATCCACATCTAGAGCGCATTAAAAATGAAGCTGGTGGAGATGAAAGTGATGAGGAGGTACCCAAATCTGTATTTGATA TAAATTTGTATTCTAATTTCAGTAATTGATGGGACAACGTTTATTTATATTTCCAAAAGTTTCTTAAAATATTTGGGCAT GAGGAAAACATAACTTGGAATTCTCCTCACCTTACTATTGTTCCATTCTTCAACTTGCATTTATGCAGCTGAACTTTCTC CTGTTCATTGAGATATCCTCTAGTTTCTTGTATTGTTTGTTACTATCGTGTTAGTGCGCATTTACTGTATTCTGTTAATG TGGGTATGGCTCTTAAATCTTCATGTAAGTTGCCCCACCTCCCCTCTTTTTTCTATCGGTGCACCCAGTGTTGAGATTTT GAAGTCTTGGTTTGCTTCTACATTATTAATCATGGCAAATGTCTACAGGATGAAGATTTTGTTGTTGACAAGGATGATGG TGGTTCTCCAACTGATGAGTCTGGTGGGGAAGATTCTGATGCTAGTGATAGTGGTGATGAGAAAGAGGTGTATTTTGCTT TTATTTTCCTTCATTACCTTGTGATACAACCCCTGTACTCTTTAAATCATTGGTGTGCCAGCCTTACACCTTAATGACGG TCAATTTTCAGAAGCCTGCCAAAGTGGAACCAAAGAAGGTTCTGTCTTCTAAGGCATCCAACTCTAAGAGGAAATCAAAA GATGCTGATGAAGATGGAAAAAAGAAAAAACAGAAGAAAAAGGACCCAAATGCACCCAAGAGGGCAATGTCTGGTTTCAT GTTCTTTTCTCAAATGGAAAGAGAGGTGCGTTCTATGTTATACATGTTGGCAATGTGATTTTGGGTTTTGTTGTGTGGGT TACTGGTGAGTGTATTCATCACTTCACTTCCGTATAGGTATAGCTATTCTATGTGGCTAGGTTTGTAGGGAAAATCTTTA CGAGGCCAGGTTTTGGATAATCTGAGATCATCCGGCAAACCTTTAGCTACTTTTTTTGATTGACTTTTCAAGTAGGTGTT ACATAAATTGAGTTCTCCTTACATATTATTATTATTTTTTTCAAATGACAGAATCTGAAGAAAACTAATCCTGGAATTTC ATTTACGGATGTGGGGAGAGTACTTGGAGAGAAATGGAAGAAGATATCAGGTATGGTTTATTGCATGCTGTTTCATTTCA TGCAGTTCCAGTGAGAGTCATTATTCTTTCATGATCAGCTCAGAGTTTATTATGTGCTGTGACTAAGTTTTGTATTTCTT TGCGTGTTGATTGCACAGCGGAGGATAAAGAGCCATATGAGGCAAAAGCCCGTGCTGATAGGAAACGTTACATGGATGAG ATTAGTGGCTACAAGAATCCACAACCCATGAATGTTGATTCAGGAAATGAATCTGACAGTGCCTAAGATTTTGATCTGAT ATAACGTAATTACTTGATATATGCAAAAAAAAAATTGAATTTGTATCACTAGCTTCCATCTAGCGTTAGTACACTTGCAA TGTAAATATTACTTTTCTAGTTTGTGAAGTTTTTGGTGATTTTACTATGTTTATAAATTCCATGCAACAACTAAGCTCCA ATTTTCTGGATTTTTTTCCGTGATCTTTCGTGGAAACATTTAAAATGCAACAAAAAGCCTATTTGTTTGACAGTTGCAGT TAAAAATAGTTACACATTAAATTTTATTTTATTTAACATTAATTATGTTTGAGTAACTTTTTTCTATCAAATTTAAAAGT ACATTTGCATACCTGCAGTTTCTTCCCAATATTTCTACACGACTGTATTCTGTAAGCTCTAAGAAAGCTATCAGATGCAA AGTTCTGAGAAGTTAAAACCAAATACAAACTTTAACTTGTATCTTTACCTGCAATACAAGAATCCAACATAGAAAGGAAA CATTTTCAATGGGATATAAAATGATTTGAATAAACTTACTATAGGATTATCAGGTAGCCTTGGATCAGTAATGACAAAGT TTTTCTCAATAAGCGCGCTCAAGTGTGGTAGCAAGATCAACCTTTCCTCTTTTCCCTGAGCTTTTCTT
CDS sequence (LotjaGi2g1v0081600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGGGCGGTCATGGTCATCTCTTCAACAACATCACCGTCGGAGGCCGCGGCGGCACGAATCCAGGCCAGATAAAAAT ACATCCTGGAGGAATTGTATGGAAAAGACAGGGGGGTGGTAAATCAATTGAGGTTGATAAAGCTGATATAATGGGGGTCA CGTGGATGAAGGTTCCAAGGTCTAATCAACTTGGTGTTCAGATCAAAGATGGCTTGTTCTACAAGTTTACTGGATTTCGT GATCAGGATGTTGTAAGCTTGACCGATTTCTTCCAAAACATGTTTGGAATAGCTGTAGAGGAGAAGAAGCTTTCTGTTAG TGGGCGCAATTGGGGAGAAGTTGATCTAAATGGAAATATGCTTGGTTTCATGGTTGGTTCAAAGCAAGCTTTTGAGGTAT CTTTAGCGGATGTCTCTCAAACACACCTTCAAGGGAAAAATGATGTGTTATTGGAGTTCCATGTGGATGACACAACTGGA GCTAATGAGAAAGATTCATTGGTGGAGATAAGTTTCCACATACCAAATTCCAACACCCAGTATGTTGGTGATGAAAATCA TCCTCCTGCTCAGGTTTTCCGTGATAAAATAATGTCTATGGCTGATGTTGGTGCTGGGGGTGAAGATGCTGTTGTTACAT TTGAGGGTATTGCAATCCTTACCCCAAGAGGACGTTACAGTGTTGAGCTACACCTGTCATTCTTGCGACTTCAAGGACAG GCTAATGATTTCAAAATCCAGTATAGCAGTATCGTTCGCATATTTTTACTTCCTAAGTCTAATCAGCCACATACATTTGT CATTATTAGTCTTGATCCCCCTATTCGGAAAGGACAAACTTTGTACCCTCATATTGTGATGCAGTTTGAAACTGATTTAG TTGAACAAAGTGAATTGGCAATAAATGAAGATCTTTATAACACCAAGTACAAGGACAAGTTGGAGCTTTCATATAAGGGT CTGATCCATGAAGTGTTCACCACAATATTACGCGGCTTGTCTGGGTCCAAAGTTACCAAGCCTGGAACATTTAGGAGTTG TCTACATGGTTATGCAGTGAAATCATCTTTGAAAGCGGAAGATGGAATTCTGTATCCCCTTGAGAAGGGCTTCTTTTTTC TACCTAAACCCCCCACTCTTATTCTTCATGATGAGATTGACTATGTGGAATTTGAGCGGGGTGGTACAAATATGCATTAT TTTGACCTTCTTATCAGACTAAAATCTGAGCAAGAGCATCTCTTCCGTAATATTCAGAGAAACGAATACGACAATTTGTT AAGTTTTATAAGGTCAAAGAGTTTAAAAATTATGAACTTAGGAGGTGCCCAGCCAACTGTTGGTATGGCTCAGGTTCTTG AGAATGATCATGATGATGCTGTTGATCCACATCTAGAGCGCATTAAAAATGAAGCTGGTGGAGATGAAAGTGATGAGGAG GATGAAGATTTTGTTGTTGACAAGGATGATGGTGGTTCTCCAACTGATGAGTCTGGTGGGGAAGATTCTGATGCTAGTGA TAGTGGTGATGAGAAAGAGAAGCCTGCCAAAGTGGAACCAAAGAAGGTTCTGTCTTCTAAGGCATCCAACTCTAAGAGGA AATCAAAAGATGCTGATGAAGATGGAAAAAAGAAAAAACAGAAGAAAAAGGACCCAAATGCACCCAAGAGGGCAATGTCT GGTTTCATGTTCTTTTCTCAAATGGAAAGAGAGAATCTGAAGAAAACTAATCCTGGAATTTCATTTACGGATGTGGGGAG AGTACTTGGAGAGAAATGGAAGAAGATATCAGCGGAGGATAAAGAGCCATATGAGGCAAAAGCCCGTGCTGATAGGAAAC GTTACATGGATGAGATTAGTGGCTACAAGAATCCACAACCCATGAATGTTGATTCAGGAAATGAATCTGACAGTGCCTAA
Protein sequence (LotjaGi2g1v0081600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTGGHGHLFNNITVGGRGGTNPGQIKIHPGGIVWKRQGGGKSIEVDKADIMGVTWMKVPRSNQLGVQIKDGLFYKFTGFR DQDVVSLTDFFQNMFGIAVEEKKLSVSGRNWGEVDLNGNMLGFMVGSKQAFEVSLADVSQTHLQGKNDVLLEFHVDDTTG ANEKDSLVEISFHIPNSNTQYVGDENHPPAQVFRDKIMSMADVGAGGEDAVVTFEGIAILTPRGRYSVELHLSFLRLQGQ ANDFKIQYSSIVRIFLLPKSNQPHTFVIISLDPPIRKGQTLYPHIVMQFETDLVEQSELAINEDLYNTKYKDKLELSYKG LIHEVFTTILRGLSGSKVTKPGTFRSCLHGYAVKSSLKAEDGILYPLEKGFFFLPKPPTLILHDEIDYVEFERGGTNMHY FDLLIRLKSEQEHLFRNIQRNEYDNLLSFIRSKSLKIMNLGGAQPTVGMAQVLENDHDDAVDPHLERIKNEAGGDESDEE DEDFVVDKDDGGSPTDESGGEDSDASDSGDEKEKPAKVEPKKVLSSKASNSKRKSKDADEDGKKKKQKKKDPNAPKRAMS GFMFFSQMERENLKKTNPGISFTDVGRVLGEKWKKISAEDKEPYEAKARADRKRYMDEISGYKNPQPMNVDSGNESDSA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 5 | 96 | 92 | 1.7E-14 | ||
| PANTHER | 6 | 637 | 632 | 0.0 | – | |
| PANTHER | 6 | 637 | 632 | 0.0 | – | |
| Pfam | 9 | 100 | 92 | 8.0E-23 | ||
| Gene3D | 97 | 182 | 86 | 5.6E-22 | ||
| Pfam | 108 | 176 | 69 | 2.2E-24 | ||
| Gene3D | 201 | 340 | 140 | 1.7E-50 | – | |
| SUPERFAMILY | 208 | 439 | 232 | 2.09E-73 | – | |
| CDD | 209 | 342 | 134 | 4.35167E-67 | – | |
| PRINTS | 221 | 237 | 17 | 2.7E-67 | ||
| PRINTS | 243 | 259 | 17 | 2.7E-67 | ||
| PRINTS | 266 | 282 | 17 | 2.7E-67 | ||
| PRINTS | 331 | 344 | 14 | 2.7E-67 | ||
| Gene3D | 341 | 442 | 102 | 4.7E-35 | ||
| CDD | 344 | 440 | 97 | 2.84647E-39 | – | |
| SMART | 350 | 440 | 91 | 1.9E-32 | ||
| Pfam | 352 | 438 | 87 | 1.8E-21 | ||
| PRINTS | 358 | 376 | 19 | 2.7E-67 | ||
| PRINTS | 376 | 393 | 18 | 2.7E-67 | ||
| PRINTS | 399 | 415 | 17 | 2.7E-67 | ||
| PRINTS | 415 | 433 | 19 | 2.7E-67 | ||
| MobiDBLite | 467 | 562 | 96 | - | – | |
| MobiDBLite | 505 | 521 | 17 | - | – | |
| MobiDBLite | 530 | 548 | 19 | - | – | |
| Gene3D | 538 | 636 | 99 | 3.9E-28 | ||
| SUPERFAMILY | 542 | 624 | 83 | 1.13E-26 | ||
| SMART | 554 | 624 | 71 | 8.7E-29 | ||
| Pfam | 555 | 623 | 69 | 8.4E-23 | ||
| CDD | 555 | 620 | 66 | 2.20199E-27 | – | |
| ProSiteProfiles | 555 | 623 | 69 | 20.096 | ||
| MobiDBLite | 599 | 639 | 41 | - | – | |
| MobiDBLite | 599 | 619 | 21 | - | – | |
| MobiDBLite | 625 | 639 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
Expression pattern of LotjaGi2g1v0081600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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