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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0098200 |
| Transcript ID | LotjaGi2g1v0098200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 5'-3' exonuclease; TAIR: AT1G34380.2 5'-3' exonuclease family protein; Swiss-Prot: sp|O67550|EX53_AQUAE 5'-3' exonuclease; TrEMBL-Plants: tr|K7MHK5|K7MHK5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0098200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:32089881..32108363
CDS sequence (LotjaGi2g1v0098200.1
Protein sequence (LotjaGi2g1v0098200.1
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 62 | 372 | 311 | 1.0E-161 | – | |
| PANTHER | 62 | 372 | 311 | 1.0E-161 | ||
| SMART | 79 | 344 | 266 | 1.1E-13 | ||
| SUPERFAMILY | 79 | 245 | 167 | 1.31E-26 | ||
| Gene3D | 84 | 240 | 157 | 1.3E-56 | – | |
| Pfam | 101 | 225 | 125 | 3.3E-21 | ||
| CDD | 116 | 226 | 111 | 6.73813E-24 | – | |
| Gene3D | 241 | 323 | 83 | 1.3E-56 | – | |
| Pfam | 253 | 336 | 84 | 8.7E-12 | ||
| SUPERFAMILY | 253 | 347 | 95 | 1.57E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | DNA-directed DNA polymerase activity | Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and a 3'hydroxyl group. | ||
| Biological process | DNA-dependent DNA replication | A DNA replication process that uses parental DNA as a template for the DNA-dependent DNA polymerases that synthesize the new strands. |