Domain Predictions — View

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IPR036279

Source: InterPro

Description

IPR036279 is a 5'-3' exonuclease, C-terminal domain superfamily.

<p>This entry represents the C-terminal domain of 5' to 3' exonucleases. The 5'-3' exonucleases are conserved in organisms as diverse as bacteriophage and mammals. It adopts a SAM fold consisting of 4-5 helices packed into a bundle of two orthogonally packed α-hairpins. This domain is involved in interactions with DNA and proteins. 5' to 3' exonucleases that contain this domain include:</p> <ul><li>Bacteriophage T4 RNase H, which has sequence similarity to the RAD2 family of eukaryotic proteins [[cite:PUB00011713]].</li> <li>5' to 3' exonuclease domain of DNA polymerase Taq, which is homologous to Escherichia coli DNA polymerase I (pol I) [[cite:PUB00022733]].</li> <li>Bacteriophage T5 5'-exonuclease, which are structure-specific endonucleases [[cite:PUB00011714]].</li> <li>Flap endonuclease-1 (Fen-1 nuclease), a structure specific nuclease that is an essential enzyme for eukaryotic DNA replication and repair [[cite:PUB00011712]].</li></ul>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 10

Transcript	Name	Description	Predicted domains	Domain count
LotjaGi1g1v0469700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Flap endonuclease 1; TAIR: AT1G01880.1 5'-3' exonuclease family protein; Swiss-Prot: sp\|Q64MA3\|GENL1_ORYSJ Flap endonuclease GEN-like 1; TrEMBL-Plants: tr\|A2Q3P8\|A2Q3P8_MEDTR Flap endonuclease GEN-like protein; Found in the gene: LotjaGi1g1v0469700	Domains G3DSA:3.40.50.1010 IPR006084 IPR006085 IPR006086 IPR029060 IPR036279 PF00752 PF00867 PR00853 PTHR11081 PTHR11081:SF54 SM00484 SM00485 SSF47807 SSF88723 cd09869 mobidb-lite	17
LotjaGi1g1v0605700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Flap endonuclease 1; TAIR: AT3G28030.1 5'-3' exonuclease family protein; Swiss-Prot: sp\|Q9ATY5\|UVH3_ARATH DNA repair protein UVH3; TrEMBL-Plants: tr\|K7K2I9\|K7K2I9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0605700	Domains Coil G3DSA:3.40.50.1010 IPR006084 IPR006086 IPR008918 IPR019974 IPR029060 IPR036279 PF00867 PR00853 PS00842 PTHR16171 PTHR16171:SF7 SM00279 SM00484 SSF47807 SSF88723 cd09868 cd09904 mobidb-lite	20
LotjaGi1g1v0605700.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Flap endonuclease 1; TAIR: AT3G28030.1 5'-3' exonuclease family protein; Swiss-Prot: sp\|Q9ATY5\|UVH3_ARATH DNA repair protein UVH3; TrEMBL-Plants: tr\|K7K2I9\|K7K2I9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0605700	Domains Coil G3DSA:3.40.50.1010 IPR001044 IPR006084 IPR006085 IPR006086 IPR008918 IPR019974 IPR029060 IPR036279 PF00752 PF00867 PR00066 PR00853 PS00841 PS00842 PTHR16171 PTHR16171:SF7 SM00279 SM00484 SM00485 SSF47807 SSF88723 cd09868 cd09904 mobidb-lite	26
LotjaGi1g1v0605700.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Flap endonuclease 1; TAIR: AT3G28030.1 5'-3' exonuclease family protein; Swiss-Prot: sp\|Q9ATY5\|UVH3_ARATH DNA repair protein UVH3; TrEMBL-Plants: tr\|K7K2I9\|K7K2I9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0605700	Domains Coil G3DSA:3.40.50.1010 IPR001044 IPR006085 IPR006086 IPR008918 IPR019974 IPR029060 IPR036279 PF00752 PF00867 PR00066 PS00841 PS00842 PTHR16171 PTHR16171:SF7 SM00279 SM00484 SM00485 SSF47807 SSF88723 cd09868 cd09904 mobidb-lite	24
LotjaGi2g1v0098200.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	5'-3' exonuclease; TAIR: AT1G34380.2 5'-3' exonuclease family protein; Swiss-Prot: sp\|O67550\|EX53_AQUAE 5'-3' exonuclease; TrEMBL-Plants: tr\|K7MHK5\|K7MHK5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0098200	Domains G3DSA:1.10.150.20 G3DSA:3.40.50.1010 IPR002298 IPR002421 IPR020045 IPR020046 IPR029060 IPR036279 PF01367 PF02739 PTHR10133 PTHR10133:SF52 SM00475 SSF47807 SSF88723 cd09859	16
LotjaGi2g1v0144600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Flap endonuclease 1; TAIR: AT3G48900.2 single-stranded DNA endonuclease family protein; Swiss-Prot: sp\|Q9M2Z3\|GENL2_ARATH Flap endonuclease GEN-like 2; TrEMBL-Plants: tr\|K7MIH1\|K7MIH1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0144600	Domains Coil G3DSA:2.40.50.40 G3DSA:3.40.50.1010 IPR000953 IPR006084 IPR006085 IPR006086 IPR016197 IPR029060 IPR036279 PF00752 PF00867 PR00853 PS50013 PTHR11081 PTHR11081:SF57 SM00298 SM00484 SM00485 SSF47807 SSF54160 SSF88723 cd00024 cd09869	24
LotjaGi4g1v0069300.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Flap endonuclease Xni; TAIR: AT3G52050.1 5'-3' exonuclease family protein; Swiss-Prot: sp\|O52225\|DPO1_THEFI DNA polymerase I, thermostable; TrEMBL-Plants: tr\|A0A0S3R340\|A0A0S3R340_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0069300	Domains G3DSA:1.10.150.20 G3DSA:3.40.50.1010 IPR002298 IPR002421 IPR008918 IPR020045 IPR020046 IPR029060 IPR036279 PF01367 PF02739 PTHR10133 PTHR10133:SF54 SM00279 SM00475 SSF47807 SSF88723 cd09859 cd09898	19
LotjaGi4g1v0382400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Flap endonuclease 1; TAIR: AT1G29630.2 5'-3' exonuclease family protein; Swiss-Prot: sp\|Q60GC1\|EXO1_ORYSJ Exonuclease 1; TrEMBL-Plants: tr\|K7L667\|K7L667_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0382400	Domains G3DSA:1.10.150.20 G3DSA:3.40.50.1010 IPR006084 IPR006085 IPR006086 IPR008918 IPR019974 IPR029060 IPR032641 IPR036279 IPR037315 PF00752 PF00867 PR00853 PS00841 PTHR11081 PTHR11081:SF8 SM00279 SM00484 SM00485 SSF47807 SSF88723 cd09857 cd09908 mobidb-lite	25
LotjaGi5g1v0234800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Flap endonuclease 1; TAIR: AT5G26680.2 5'-3' exonuclease family protein; Swiss-Prot: sp\|C6TEX6\|FEN1_SOYBN Flap endonuclease 1; TrEMBL-Plants: tr\|I3SAA1\|I3SAA1_LOTJA Flap endonuclease 1; Found in the gene: LotjaGi5g1v0234800	Domains Coil G3DSA:3.40.50.1010 IPR002421 IPR006084 IPR006085 IPR006086 IPR008918 IPR019974 IPR023426 IPR029060 IPR036279 MF_00614 PF00752 PF00867 PR00853 PS00842 PTHR11081 PTHR11081:SF56 SM00279 SM00475 SM00484 SM00485 SSF47807 SSF88723 cd09867 cd09907 mobidb-lite	27
LotjaGi5g1v0234800.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Flap endonuclease 1; TAIR: AT5G26680.3 5'-3' exonuclease family protein; Swiss-Prot: sp\|C6TEX6\|FEN1_SOYBN Flap endonuclease 1; TrEMBL-Plants: tr\|A0A072VM97\|A0A072VM97_MEDTR Flap endonuclease 1; Found in the gene: LotjaGi5g1v0234800	Domains Coil G3DSA:3.40.50.1010 IPR002421 IPR006084 IPR006085 IPR006086 IPR008918 IPR019974 IPR023426 IPR029060 IPR036279 MF_00614 PF00752 PF00867 PR00853 PS00842 PTHR11081 PTHR11081:SF56 SM00279 SM00475 SM00484 SM00485 SSF47807 SSF88723 cd09867 cd09907	26

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
cd09907	CDD	1	10.00