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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0178300 |
| Transcript ID | LotjaGi2g1v0178300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disease resistance protein (TIR-NBS-LRR class); TAIR: AT5G17680.2 disease resistance protein (TIR-NBS-LRR class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|V7C098|V7C098_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0178300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:59874294..59879335) extracted from Lotus japonicus Gifu genome v1.2.
ATCTTCCTCTTTCTTCCCAACCAAGTCATACATGTTTTATAAAGTGCAAAGCTAGGTTCACACACACGCTTCTACAACTA ATTGAATAGCATACTGCATACCCATCTCTCTACTAAGTCTAAGTCCAGTGAAACCATCAAACAGTACCCACGGTGTGTAT ATACCAGTACCACCGCGTACTCATAGCTTTCCTGTTATAATATAGTTTTTGCATGAGTTGACTTTGAGGTCTGCGCTCCA ACTGCAACCATAAAAGAATGAGAATGATGAATAACCATTCATTGGAGTGCAGCGCAGGCGAGGTGTTATGGCGGCTCGAT CATCATCCTCCTCCTCCTACGATGTGTACCTCAGTTTCAGTGACTCAGATACTCGATTCGGTTTCACTAGCTACCTCTAC AAAGCTCTCTCTGACAAGGGAATCCTCACCTTCATCGATAAACGGGAGCTTCACAAAGGGAGTGAAATCACGCCATCACT TCTCAAAGCAATTGAAAATTCCAGGACTGCCATCATTGTTCTCTCTGAAAACTTCGCTTCTTCTTCGTTTTGCTTGGATG AACTCGCCTACATCATTGAGCGTGGCACGGCAAAGGGTCTATTGGTATTGCCTGTTTTCTATTATGTCGATCCTTCTGAT GTGCGACATCAGAGAGGGACTTATGGAGAAGCATTTGCTAAGCATGAGGAGAGGTTCAAGGATAATAGGGAGAAACTGCA GAAATGGAGGAATGCTCTGCAACAAGCAGCTAATTTTTCCGGCTACCATGTCCAACACAGGTACCCTATTACCTCCTCAC CAATCTTTGCACCTTTTAAATTTTTTCGCCAAAATGAAAAAATCGTTGGCCTAATGCCTAATTTATTGTTTATACTTGAA GAGAAAAGAAATGCTTGTTTCAATCAGTTTGAATTGCAAATTTGCAATTATATGAAAAAATATCAATATAATGACAGTGC ATAAACTTGTCTGAATGAGCAGTGGATATGAACATGACTTTATTGAGAAGATCGCTGAAGACATCTCTAGCAGGATTAGT CGGTTTCCTTTACGTGTTGCTAATTACCCAGTTGGCCTCGATTCTCGATTGCAACAAGTTTGCTCGCTTCTGGATGTTGG ATCTGATGATAGTGTCCTCATGGTAGGGATCTGGGGAATGGGCGGCATAGGTAAAACAACACTTGCTCGGGCAGTTCATA ATTTGATTGCTGATCAGTTTGAAAGCTTATGCTTCCTTGATGGTGTGAGTGAAATTTCACGTAGAAATGGGGTAATGCAT CTCCAAGAGAAGCTCCTTTTTCACATAGCTGGAAACAAAGATATTCATCTAGAAAGTGTGGGAGAAGGAGTTTCAGCCAT AAAGCATACCTTCCATGAAAAAAAAGTTCTTTTGATTCTAGATGATGTGGACAGACTACAGCAATTGGAAGCCTTGGTTG GAGGACCTAATTGGTTCGGTTTGGGCAGCAGAGTTATCATTACAACTCGGGATAGACATTTGCTAGCAGTCCATGGGGTT GAAAGAATATACAAGGCAGAAGAGTTAAATAACACAGAGGCTCTTGAGTTGCTCAGGTGGAATGCGTTTAGATATGGCAA TGTTAATCCAAGTTACACAAAAGTTTTAAATGAAGCAGTAACTTATTCTTCTGGTCTTCCCTTGGCTTTGGAAGTAATAG GTTCCAATTTGTTTGGAAAAAGTGTGGAGGAATGGAGATATGCATTAGATCGGTTGAAAAGAATTCCTCATAATGAAATT CACAATATACTTAAAGTAAACTATGATGATTTGGAGAAAGATGAGCAACGAGTCTTTCTTGACATTGCTTGCTGCTTCAA AGGATATGATTTGGCAGAGGTTCAAGATATACTTTGTGCTCATCATGGTTACAACGTCAAACATCATATTGGAGTATTGA TTGAAAAATCTCTCTTAAATGTTAGTTCGGAAGGTAAGGTAACACTACATCCCTTGATAGAGGACATGGGCAAAGACATT GTCCGCCAAGAATCACTAAGAGAGCCTGGGAAACGCAGTAGGTTATGGCTCCCTGAAGATTTAGTTCATGTTTTAGAAGA AAATATGGTAAGGTTAATGTGGATGGTTTGTTATTCATGTTTAACCTTTTATTTATCTCTTTTGACTATTATATGCTGAG ATCATTGTTGTTTTTTACACTTTGAAATATGTAATTTCTATGTTGAAATCTTACATATGTACATATATTTTGGTTGATTT GTGCTTTTTGTGTTACAGGGAACTGGTAAAACTGAAATCTTACATCTGGATTTCCCCTTAAATAAAGAAGTGAAATGGGA TGGGAATGCCTTCAAGAAGATGAAAAACCTCCGAACACTTATTATAAAAAAATGTCATTTCTCCAAAGCTCCCATACATC TTCCTAATAGTTTAAGAGTATTGGAATGGTGGAAATATCCTTCAGAGGAGTTACCATCTGATTTTCATGCGAAGGAACTT TCTATATGGAAACCGACCGAGTTACTAAAGGCAAGTATAAGTTCTTTCCTCTGGTCTTGTATATTCAAGATAATTCAGTT GATTATTGTTACTTTCTTTTCTTTTCAGAAGTTCATATGTCTGAGAGCTTTATTTAACTGTGATCAATGCATGACACAAA TACATGATGTATCTGATGTCCCAAATTTAGGGGAAAAAGATTTAATTTGAAATTCACAAACATGTTGAATTCTGGACAAA CTTAGAATCTTAGATGCTAAAGAATGTAGCAATCTCAAGACTTTTCCATCCATCAAGTTTACCTCTCTTCAGCATCTCAA TATTTCAGATTGATCAAATCTTGAGAAATTTACTGTAAATCAGGAAAGATAGAAAAATATAGCTGAACATTATTTTCAGT TAACTTTATCCTCCCATGAAAGAGTTGCCATTTTCCTTGCCTCATTGTTAAACTTTGAACATTAACAACTGCTGGACCTA GAATGTTTCAGTTTCTGAGTAGCATTTTCTTGTTGCTAGAACTTAAATGTTGAAGTTTTATAGATATATGGGTTGCGATC ATCTAAACAGGATGGAGGTTTCCAGAACATGTATTTCTGCTATCTTGTCTCTTGTGTCTTTCTAAAATAGTATAGTTAAT GATGTATGAATTGGAAAACACACAATAATGATTTCAATTTTCAAGTGTTTAAAGAGTTTTTGAAATTCAGACATGCAGGA GAATTTATTTGCACCTTTCTTGGGACATAAATTTAGTTAACAAAGTAAATTCCAAACTCCTAGGTGCATCTAATTCAATA GGTAGAAAAGTTAGAACCAAGACTCAGTGAAAAAGGTACATAAAAGGAAAACTGTAAATAAGAAAAACTTTTTCTCTCTT TCCATGCAATTCTCACAAAGCATCTTACAAAAAAACACAATTTCTCAGTCTCTTTTAATCCTAGGCTGACATTCATGGTT CTTGTTATGTTTCTTGCTCTACAGAGGGTTCCTGATGTTCCACGGAATTATGTGAGGGTTTCTCCACTTAAGTTGCATAT TTTACAGAGGGTTTTGCTAGGTAAGAAGACGTGGAAACCTATAGAACTTTTGAAGGATTTATTAGAGAGCATTCCTGAAG TGCTGCAGACTTCTCAGGGGGTTCCTCAGATTACTTTGCAGACTTCAGAGATGTTTTTTCAAGCTGAGACGTTGTGGAGA CCTATTGGCCTTTTGCAGACATCACAGAACATTCCCGGAAATTTTCTGACTTCTCAGGAGTTTCCTCAAGTTATGTTGCA GACTTCACAGAGGGTTTTTCAAGCTCAGACGGGGTGGAGATTTGTTGGCCTTTTGCAAAGTGTTCCTGGGGTTTTGCCGA TTTCTCTAAGGGATTCTCAAGTTATGTTGCAGCCTGCACTGCGAGCTAAGATGGGGTGGAGACTTGTTGGCCTTGCATCA AGTTTAGTAGGCCTGTTATGTCATGCTCTAAGCCCTTCTTTCAAACGTTTAATTGGTAGGTGGAACCTTTTCAAGCTCCT TCTTTACTGTGTCTTTTCCGTGGTTGTCTGTACCACTGTATTGTTTGCGAAGCAGCTCTCACTCTTAAGGCAGCAAGGTC AGCTCCAAAGCTATGTTCTATTTGTGGTTTTGATGATCATCTCAGTGTACTCATTCTTATACGATAAAGCTGTGGATGGG AAACCTGAAATAAAGAGCTTGGTTGCTAATGCGGCCTTTGCTTTGGTTTCACTGAGTTTGTCCAAACTGATTAAGTCTGG ATATGAGATTGGTATGTTTGCTTATTTCCTAGGCTGCTTTACTGTTCAACTGGTGACCATCAACTGGGTGCTGATTTTGG TTGCCATAATCTTCGGCTGTCCCCTCGTTGTTATGCATTCCTCTTCTGATTTCCCCACTAGATGATGGTAATGGAGGTCA TGTTATATATTCCTCTTTGGATTCCCAACCAGAAGTTGGTAGTGGTGGCCAACATGTCATAGACATGCCATGTTAGAAAG GGAACTGCAACAAATAACCAAATGTTTAAGAAGTGCTGCTTTGCAGTAGCATTGTTGGGGATTTCAGTTTTATGGAACCA TATGGACAATGGAGATGAAGTATCGGTTGGAAAGAGATATTAGTTCCTAAATAATTTTGGTTCTTGATGTTTAGTCTTAG AGCAAAAGCCTCAATGATTTCACTGGAAGTCTTTAGACCTTCGTGTATACACTTTTCCGCTTGTGGTTTGTAAGTAACGT CTTTTTGGTTCCCAAAGAAGTCTCCCAAGATAACACTATATATGTTGCAGTGGAGAACAAGGCAATTCAGCCTAGTCATC AATGAGTGGTTTAGGCTTAATGACACTTATGTGACTTTTGTCACATGACTTTTTTAAGTAATCACATGACTATTAATTTG TTTTAATCGAGATCGTTTCCGATTAGATCTATCGGTTATGATTTATTCTAATGTTCTCAATAAAATTACATTTGGCATTA TATATGTGTGTGTGTATGAGATGTATTGTATATGAGATGTATCTCATGAGAAATATATTTTTATATCGGAGTAATTCACG AC
CDS sequence (LotjaGi2g1v0178300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCTCGATCATCATCCTCCTCCTCCTACGATGTGTACCTCAGTTTCAGTGACTCAGATACTCGATTCGGTTTCAC TAGCTACCTCTACAAAGCTCTCTCTGACAAGGGAATCCTCACCTTCATCGATAAACGGGAGCTTCACAAAGGGAGTGAAA TCACGCCATCACTTCTCAAAGCAATTGAAAATTCCAGGACTGCCATCATTGTTCTCTCTGAAAACTTCGCTTCTTCTTCG TTTTGCTTGGATGAACTCGCCTACATCATTGAGCGTGGCACGGCAAAGGGTCTATTGGTATTGCCTGTTTTCTATTATGT CGATCCTTCTGATGTGCGACATCAGAGAGGGACTTATGGAGAAGCATTTGCTAAGCATGAGGAGAGGTTCAAGGATAATA GGGAGAAACTGCAGAAATGGAGGAATGCTCTGCAACAAGCAGCTAATTTTTCCGGCTACCATGTCCAACACAGTGGATAT GAACATGACTTTATTGAGAAGATCGCTGAAGACATCTCTAGCAGGATTAGTCGGTTTCCTTTACGTGTTGCTAATTACCC AGTTGGCCTCGATTCTCGATTGCAACAAGTTTGCTCGCTTCTGGATGTTGGATCTGATGATAGTGTCCTCATGGTAGGGA TCTGGGGAATGGGCGGCATAGGTAAAACAACACTTGCTCGGGCAGTTCATAATTTGATTGCTGATCAGTTTGAAAGCTTA TGCTTCCTTGATGGTGTGAGTGAAATTTCACGTAGAAATGGGGTAATGCATCTCCAAGAGAAGCTCCTTTTTCACATAGC TGGAAACAAAGATATTCATCTAGAAAGTGTGGGAGAAGGAGTTTCAGCCATAAAGCATACCTTCCATGAAAAAAAAGTTC TTTTGATTCTAGATGATGTGGACAGACTACAGCAATTGGAAGCCTTGGTTGGAGGACCTAATTGGTTCGGTTTGGGCAGC AGAGTTATCATTACAACTCGGGATAGACATTTGCTAGCAGTCCATGGGGTTGAAAGAATATACAAGGCAGAAGAGTTAAA TAACACAGAGGCTCTTGAGTTGCTCAGGTGGAATGCGTTTAGATATGGCAATGTTAATCCAAGTTACACAAAAGTTTTAA ATGAAGCAGTAACTTATTCTTCTGGTCTTCCCTTGGCTTTGGAAGTAATAGGTTCCAATTTGTTTGGAAAAAGTGTGGAG GAATGGAGATATGCATTAGATCGGTTGAAAAGAATTCCTCATAATGAAATTCACAATATACTTAAAGTAAACTATGATGA TTTGGAGAAAGATGAGCAACGAGTCTTTCTTGACATTGCTTGCTGCTTCAAAGGATATGATTTGGCAGAGGTTCAAGATA TACTTTGTGCTCATCATGGTTACAACGTCAAACATCATATTGGAGTATTGATTGAAAAATCTCTCTTAAATGTTAGTTCG GAAGGTAAGGTAACACTACATCCCTTGATAGAGGACATGGGCAAAGACATTGTCCGCCAAGAATCACTAAGAGAGCCTGG GAAACGCAGTAGGTTATGGCTCCCTGAAGATTTAGTTCATGTTTTAGAAGAAAATATGGGAACTGGTAAAACTGAAATCT TACATCTGGATTTCCCCTTAAATAAAGAAGTGAAATGGGATGGGAATGCCTTCAAGAAGATGAAAAACCTCCGAACACTT ATTATAAAAAAATGTCATTTCTCCAAAGCTCCCATACATCTTCCTAATAGTTTAAGAGTATTGGAATGGTGGAAATATCC TTCAGAGGAGTTACCATCTGATTTTCATGCGAAGGAACTTTCTATATGGAAACCGACCGAGTTACTAAAGGCAAGTATAA GTTCTTTCCTCTGGTCTTGTATATTCAAGATAATTCAGTTGATTATTGTTACTTTCTTTTCTTTTCAGAAGTTCATATGT CTGAGAGCTTTATTTAACTGTGATCAATGCATGACACAAATACATGATGTATCTGATGTCCCAAATTTAGGGGAAAAAGA TTTAATTTGA
Protein sequence (LotjaGi2g1v0178300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAARSSSSSSYDVYLSFSDSDTRFGFTSYLYKALSDKGILTFIDKRELHKGSEITPSLLKAIENSRTAIIVLSENFASSS FCLDELAYIIERGTAKGLLVLPVFYYVDPSDVRHQRGTYGEAFAKHEERFKDNREKLQKWRNALQQAANFSGYHVQHSGY EHDFIEKIAEDISSRISRFPLRVANYPVGLDSRLQQVCSLLDVGSDDSVLMVGIWGMGGIGKTTLARAVHNLIADQFESL CFLDGVSEISRRNGVMHLQEKLLFHIAGNKDIHLESVGEGVSAIKHTFHEKKVLLILDDVDRLQQLEALVGGPNWFGLGS RVIITTRDRHLLAVHGVERIYKAEELNNTEALELLRWNAFRYGNVNPSYTKVLNEAVTYSSGLPLALEVIGSNLFGKSVE EWRYALDRLKRIPHNEIHNILKVNYDDLEKDEQRVFLDIACCFKGYDLAEVQDILCAHHGYNVKHHIGVLIEKSLLNVSS EGKVTLHPLIEDMGKDIVRQESLREPGKRSRLWLPEDLVHVLEENMGTGKTEILHLDFPLNKEVKWDGNAFKKMKNLRTL IIKKCHFSKAPIHLPNSLRVLEWWKYPSEELPSDFHAKELSIWKPTELLKASISSFLWSCIFKIIQLIIVTFFSFQKFIC LRALFNCDQCMTQIHDVSDVPNLGEKDLI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 615 | 615 | - | – | |
| Gene3D | 4 | 178 | 175 | 4.3E-65 | ||
| SUPERFAMILY | 4 | 153 | 150 | 9.16E-41 | ||
| PANTHER | 8 | 664 | 657 | 3.2E-256 | – | |
| PANTHER | 8 | 664 | 657 | 3.2E-256 | – | |
| ProSiteProfiles | 9 | 150 | 142 | 28.468 | ||
| SMART | 10 | 150 | 141 | 2.8E-36 | ||
| Pfam | 11 | 174 | 164 | 3.3E-44 | ||
| SUPERFAMILY | 177 | 439 | 263 | 2.46E-63 | ||
| Gene3D | 179 | 340 | 162 | 1.4E-29 | – | |
| CDD | 188 | 328 | 141 | 1.36261E-5 | – | |
| Pfam | 194 | 427 | 234 | 5.2E-29 | ||
| SMART | 208 | 344 | 137 | 1.5E-4 | ||
| PRINTS | 211 | 226 | 16 | 3.2E-22 | – | |
| PRINTS | 287 | 301 | 15 | 3.2E-22 | – | |
| PRINTS | 380 | 394 | 15 | 3.2E-22 | – | |
| SUPERFAMILY | 415 | 523 | 109 | 1.22E-23 | ||
| PRINTS | 552 | 568 | 17 | 3.2E-22 | – | |
| TMHMM | 613 | 635 | 23 | - | – | |
| Phobius | 616 | 635 | 20 | - | – | |
| Phobius | 636 | 669 | 34 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. | ||
| Molecular function | ADP binding | Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate. |
Expression pattern of LotjaGi2g1v0178300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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