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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0256800 |
| Transcript ID | LotjaGi2g1v0256800.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FACT complex subunit SSRP1; TAIR: AT3G28730.1 high mobility group; Swiss-Prot: sp|O04235|SSRP1_VICFA FACT complex subunit SSRP1; TrEMBL-Plants: tr|I1J7R6|I1J7R6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0256800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:72298894..72303480) extracted from Lotus japonicus Gifu genome v1.2.
TGGGTATGTGGCTGAAACTGGAAGTTATGTATGACAGTTTTTTTCATGGGTTTGCAGAATCCAGGGCAGATAAAAATATT CTCTGGAGGAATTGCATGGAAAAGACAGGGGGGTGGTAAATCAATTGAGATTGATAAAGCTGATATAATGGGGGTCACAT GGATGAAAGTTCCAAGGACTAATCAGCTTGGTGTTCAGATCAAAGATGGGCTGTACTACAAATTTACTGGATTCCGTGAT CAGGTTAATCTGTGCCTCTATGGAATGTGCATTTACATATATATATTTAATGTAGAAAAATGGATTTTGAACTTATGGTC TGGTCTCTAATTTTTGTTCCTTTTGGAGTCAATCGCGGATCGTGGCCTGTCGGATGACCCCCAAAAATGAAATCCCACAC AAGGGAAGGCCGTTATTGGCCGCGAATAGCGAGATTTCGCAGCCGCGATAGGCTACGCTACGCGACGGCACTATCGCGCG CTATTGATAACTATGATTAACAGTTTGACAGATCTTAATATTGATTAGTTATACTTGGATTGCTAATCAAAAGCTGTTTC ATATGTTGATATTTTTATACATATTTTGCAGGATGTTGTAAGCTTGACCAGTTTTTTCCAAAATAACTTTGGAATATCTG TAGATGAGAAGCAGCTTTCTGTTAGTGGGCGCAATTGGGGAGAAGTTGATCTAAATGGTTGTTGATATTTCCATGAAATC ACTTTTGTCTTGCAACTAATATTATCTGCATGATGCATTTGCATATATCAGACATCTCTCTTTGTAATCCTTACTTGCTA TACTTCTAAAAATAGTGTTTGGGGAAAAGTAGTTTGACATCACTTTCTGTTTGACATTGCACCATCGTGAGGACATGGTA TGTAAGCAAGGGGAAGCGGTTTCTTATTTTCAAAGGAACTGAGTTGATATCATTCAGTTTGTTTTTTTGACATACAGTAT ATATTCTTGTATAGTGCAGGATGGATTCAAATTTCAATATGTGAGATCTTATGTGCTGTTACTTCTCTTTTAACCATTTC AAAAGTTGGTTCTTTTCTTTTTGTTGTACTCTAGGTCTCCAATAAATCTAACCACCAATGCCTCCAATTTTATATTTACA TGATGTACAAAAGTGAAAAAAATTGAGATAGGAAAGCATGAAAAAGTTAAGATAGGAAAGTGTTTTTCCTTTGGGGGAGG GGGGAGGGGACTGGGAGCTGCTTCTCAAACCGGAATTTCATCTCATTCTTGTTTTGTTTTTTCCTTTTGCCAATCAAATG CAGTCTTTCTCTTCGTGGTGAAGCTTCTTTGATGGAATTGACCTGACTTCTTCTGTGCAGTCATACTACCACTGTATGTA CTTATGCTTCTAGTTACATTTCAGGAAATATGCTGGCATTCATGGTTGGTTCAAAGCAATCTTTCGAGGTGTCTTTAGCT GATGTCTCTCAAACGACGCTTCAAGGGAAAAATGATGTGATGTTGGAGTTCCATGTGGATGACACAACTGGAGCTAATGA GGTATATCTGTATATACGTGCACATAAATTCTTTGATGTTTTAATGAAATTTCATATAGAACAACCTGCTTTCTCATCCA AGCTTTGGCTTGAACAACATGCTGCTGTTCATAGTTTTTATATGGGTTTGCATTTTTTATGGTCTAATATTGTTCATGTT ATGATGTCAGAAAGATTCATTGATGGAGTTAAGTTTCCATATACCAAATTCCAATACCCAGTATGTTGGCGATGAAAATC ATACTCCTGCTCAGGTCAGTTTGCTCATGACTTTTATATATCGCGCGATATAGTAACTTCTAGGCAACTGACATTTGCCC ACTCTTTTTTTGTATCAGGTTTTCCGTGATAAAATAATGTCTATGGCTGATGTCGGTGCTGGAGGTGAAGATTCTGTTGT TACATTTGATGGTATTGCAGTCCTTACACCAAGGTGATCCTCTTTCAAATTATATTGTATACTGATGCTTGCATTTATGT CCTTTCATGAAAAAGGATTAATCCCTATTAATGCAAATTTGTATTCTTGTGCAGAGGACGTTACAGTGTTGAGTTACACC TGTCATTCTTGCGGCTTCAAGGACAGGCTAATGATTTTAAAATCCAATATAGCAGTGTGGTTCGCCTATTTTTACTTCCT AAGGTTTATTTCCTGATCATTTGTTTTCATATTAAGTGAACGATAACGTAGTGCAATCAGCCAACCATGTCTCTTATACT TGATGCTTTTATCTTGACCTGTTAAGTACACTGACAACTTCGCATCTCAACGTTTATCTGCAGTCCAATCAGCCACATAC TTTTGTCATTGTTAGTCTTGATCCCCCTATTCGGAAAGGACAAACTTTGTACCCTCATATTGTGATGCAGGTAATTGCTC ACTGTTTTATGGTTCTCAATTTAGGTGATACATATTTTGCTTGCTTCTGAACCTAACATATTTTGCTCATTCCTGTATAG TTTGAAACTGATGTTGTTTTTCAAAGTGAATTGGCAATAAACGAAGATCTTTATAACACTAAGTACAAGGACAAGTTGGA GCTGTCTTATAAGGTATTGCTTAAACTGTTGATAATTGCTTTACTGATATAGAACCCCTGAGATACTGCTTCGCAAAGGC TGCTTGTGTAAATAAAGAGCATAGTGATGCCATTATTGATACATATCATTCACAATTCAATAATCAGGGGCTAATCCATG AAGTGTTCACCACAATATTACGTGGCTTATCTGGGGCTAAAGTTACCAAGCCTGGAAAATTTAGGAGTTGTCTAGATGGT TATGCAGTGAAATCATCTTTGAAAGCTGAAGATGGAATTCTGTATCCCCTTGAGAAGAGCTTCTTTTTCCTACCTAAACC TCCCACTCTTATTCTTCATGAAGAGGTAAAATCCATTTATTTTTTACTGATGGTCAGATATCTGCTAGCCACTCTTTGAC ATACGTTTTATACATTGGAGGTTTTGATTTTTTTCATCATCTCCTACTAGGTTGACTATGTAGAATTTGAGCGACATGCT GCCGGTGGTTCAAATATGCATTATTTTGACCTTCTTATCAGATTAAAATCTGAGCAAGAGCATCTCTTCCGCAATATTCA GAGAAATGAATACCATAATTTGTATAGTTTTATCAGGTATACTAGCTCATTGTCAAATTTTACTTTGTTACAATTAATTG TTTGTTTTAATCCTAAACAATTTATTTTTGTTCTGCGCATACAGGGAAAAGGGCTTAAAAATTATGAACTTAGGAGGTGC CCAGCCAACTGTTGGTATGGCTCAAGTTCTTGAGAATGATGATGATGATGCTGTTGATCCACATCTAGAGCGCATTAAAA ATGAAGCTGGTGGAGATGAAAGTGATGAGGAGGTACCCAAATCTGTATTTGATTTTATTCTTTAGCTCAAGGGTAACAGT TAGCAAATTAGTATTCTTTTTTCAGTAATCGAGGGGACGACATTTATTTATATATCCAACCGCTTCTTTAAATATTTGGG CATGAGAAAACCTAAGTGAGCTTGGAATTCTGCTTACATTACTATTTTCCTATTCTGAAGCTTGCATTTTCGGTGCTGAA CTTTCTCCTGTTAATTAATCTATCCTTTTTAGTTTCTTGTATTGTTTGTTTTGCTCACTATGTGTTTGTGTGCATTTGCT CTGTCATCTGTTAATGTGAGCATGTCTCTTCAGTCCGCATGCAAGTTGCTCTACTTTCCCCTTTTTTCTTTTGGGGCACC CAATGTCTGGAACTTTGAAGAGTCTTTTTGCTTCTATGTTATTAATCAGTGGCAAATGTCAACAGGATGAAGATTTTGTT CTTGACAAGGATGATGGAGGTTCTCCTACTGATGATTCTGGGGGGGATGATTCTGATGGTAGTGATAGTGGTGATGAGAA AGAGGCAAGTGGTTTGTTTTTATTTGCCTTCATTACCTTGTGATACCTCTCTTTCTACTCTTTAAGTCTTTGGTGTTCCA GCCTTACACCTAATAGCGGTCTATTTTCAGAAGCCTGCCAAAAAGGAACCAAAGAAGGATCTGCCTTCTAAGGCATCTAC TTCTAAGAAGAAGCCAAGAGATGCTGATGAAGATGGAAAGAAGAAAAAACAGAAGAAGAAAAAGGACCCAAATGCACCCA AGAGGGCAATGTCTGGTTTCATGTTCTTTTCGCAAATGGAAAGAGAGGTGTGTTCTACTGGAAATGATCGATTTTTCAAT TAGAATTTATTTCTCATTACTTCTTATCTCCTAATATTTTTTTTCAATGACAGAATCTAAAGAAAACTAATCCTGGAATT TCATTTACGGATGTTGGGAGAGTACTTGGAGAGAAATGGAAAAAGATGTCAAGTATGGCTTGTTTCATGTTGTTTCATTT CATGCAATTCCACTGACTATTATGTTCTATGACTAAGTTTTTGTGTGTTGAATGCGCAGCGGAGGAGAAAGAACCATATG AGGTAAAAGCCCGTGCCGATAAGAAACGGTATATGGATGAGATTAGTGGCTACAAGAATCCACAACCGATGAATGTTGAT TCAGGAAATGAATCTGACAGTCCCTAA
CDS sequence (LotjaGi2g1v0256800.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAAGCAGCTTTCTGTTAGTGGGCGCAATTGGGGAGAATTACATTTCAGGAAATATGCTGGCATTCATGGTTGGTTC AAAGCAATCTTTCGAGGTGTCTTTAGCTGATGTCTCTCAAACGACGCTTCAAGGGAAAAATGATGTGATGTTGGAGTTCC ATGTGGATGACACAACTGGAGCTAATGAGAAAGATTCATTGATGGAGTTAAGTTTCCATATACCAAATTCCAATACCCAG TATGTTGGCGATGAAAATCATACTCCTGCTCAGGTTTTCCGTGATAAAATAATGTCTATGGCTGATGTCGGTGCTGGAGG TGAAGATTCTGTTGTTACATTTGATGGTATTGCAGTCCTTACACCAAGAGGACGTTACAGTGTTGAGTTACACCTGTCAT TCTTGCGGCTTCAAGGACAGGCTAATGATTTTAAAATCCAATATAGCAGTGTGGTTCGCCTATTTTTACTTCCTAAGTCC AATCAGCCACATACTTTTGTCATTGTTAGTCTTGATCCCCCTATTCGGAAAGGACAAACTTTGTACCCTCATATTGTGAT GCAGTTTGAAACTGATGTTGTTTTTCAAAGTGAATTGGCAATAAACGAAGATCTTTATAACACTAAGTACAAGGACAAGT TGGAGCTGTCTTATAAGGGGCTAATCCATGAAGTGTTCACCACAATATTACGTGGCTTATCTGGGGCTAAAGTTACCAAG CCTGGAAAATTTAGGAGTTGTCTAGATGGTTATGCAGTGAAATCATCTTTGAAAGCTGAAGATGGAATTCTGTATCCCCT TGAGAAGAGCTTCTTTTTCCTACCTAAACCTCCCACTCTTATTCTTCATGAAGAGGTTGACTATGTAGAATTTGAGCGAC ATGCTGCCGGTGGTTCAAATATGCATTATTTTGACCTTCTTATCAGATTAAAATCTGAGCAAGAGCATCTCTTCCGCAAT ATTCAGAGAAATGAATACCATAATTTGTATAGTTTTATCAGGGAAAAGGGCTTAAAAATTATGAACTTAGGAGGTGCCCA GCCAACTGTTGGTATGGCTCAAGTTCTTGAGAATGATGATGATGATGCTGTTGATCCACATCTAGAGCGCATTAAAAATG AAGCTGGTGGAGATGAAAGTGATGAGGAGGATGAAGATTTTGTTCTTGACAAGGATGATGGAGGTTCTCCTACTGATGAT TCTGGGGGGGATGATTCTGATGGTAGTGATAGTGGTGATGAGAAAGAGAAGCCTGCCAAAAAGGAACCAAAGAAGGATCT GCCTTCTAAGGCATCTACTTCTAAGAAGAAGCCAAGAGATGCTGATGAAGATGGAAAGAAGAAAAAACAGAAGAAGAAAA AGGACCCAAATGCACCCAAGAGGGCAATGTCTGGTTTCATGTTCTTTTCGCAAATGGAAAGAGAGAATCTAAAGAAAACT AATCCTGGAATTTCATTTACGGATGTTGGGAGAGTACTTGGAGAGAAATGGAAAAAGATGTCAACGGAGGAGAAAGAACC ATATGAGGTAAAAGCCCGTGCCGATAAGAAACGGTATATGGATGAGATTAGTGGCTACAAGAATCCACAACCGATGAATG TTGATTCAGGAAATGAATCTGACAGTCCCTAA
Protein sequence (LotjaGi2g1v0256800.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRSSFLLVGAIGENYISGNMLAFMVGSKQSFEVSLADVSQTTLQGKNDVMLEFHVDDTTGANEKDSLMELSFHIPNSNTQ YVGDENHTPAQVFRDKIMSMADVGAGGEDSVVTFDGIAVLTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKS NQPHTFVIVSLDPPIRKGQTLYPHIVMQFETDVVFQSELAINEDLYNTKYKDKLELSYKGLIHEVFTTILRGLSGAKVTK PGKFRSCLDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEVDYVEFERHAAGGSNMHYFDLLIRLKSEQEHLFRN IQRNEYHNLYSFIREKGLKIMNLGGAQPTVGMAQVLENDDDDAVDPHLERIKNEAGGDESDEEDEDFVLDKDDGGSPTDD SGGDDSDGSDSGDEKEKPAKKEPKKDLPSKASTSKKKPRDADEDGKKKKQKKKKDPNAPKRAMSGFMFFSQMERENLKKT NPGISFTDVGRVLGEKWKKMSTEEKEPYEVKARADKKRYMDEISGYKNPQPMNVDSGNESDSP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 30 | 30 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 4 | 12 | 9 | - | – | |
| Gene3D | 10 | 82 | 73 | 1.5E-13 | ||
| Pfam | 12 | 76 | 65 | 4.3E-20 | ||
| Phobius | 13 | 30 | 18 | - | – | |
| PANTHER | 14 | 541 | 528 | 2.2E-255 | – | |
| PANTHER | 14 | 541 | 528 | 2.2E-255 | – | |
| Phobius | 31 | 543 | 513 | - | – | |
| Gene3D | 101 | 240 | 140 | 1.0E-49 | – | |
| SUPERFAMILY | 108 | 342 | 235 | 3.2E-74 | – | |
| CDD | 109 | 242 | 134 | 5.0706E-66 | – | |
| PRINTS | 121 | 137 | 17 | 4.7E-69 | ||
| PRINTS | 143 | 159 | 17 | 4.7E-69 | ||
| PRINTS | 166 | 182 | 17 | 4.7E-69 | ||
| PRINTS | 231 | 244 | 14 | 4.7E-69 | ||
| Gene3D | 241 | 345 | 105 | 8.0E-35 | ||
| CDD | 244 | 343 | 100 | 3.13376E-43 | – | |
| SMART | 250 | 343 | 94 | 3.2E-33 | ||
| Pfam | 252 | 341 | 90 | 1.3E-20 | ||
| PRINTS | 258 | 276 | 19 | 4.7E-69 | ||
| PRINTS | 276 | 293 | 18 | 4.7E-69 | ||
| PRINTS | 302 | 318 | 17 | 4.7E-69 | ||
| PRINTS | 318 | 336 | 19 | 4.7E-69 | ||
| MobiDBLite | 370 | 466 | 97 | - | – | |
| MobiDBLite | 408 | 450 | 43 | - | – | |
| Gene3D | 439 | 529 | 91 | 1.6E-29 | ||
| SUPERFAMILY | 446 | 528 | 83 | 2.88E-27 | ||
| SMART | 458 | 528 | 71 | 5.8E-29 | ||
| ProSiteProfiles | 459 | 527 | 69 | 20.158 | ||
| Pfam | 459 | 527 | 69 | 2.5E-23 | ||
| CDD | 459 | 524 | 66 | 1.66008E-27 | – | |
| MobiDBLite | 521 | 543 | 23 | - | – | |
| MobiDBLite | 529 | 543 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
Expression pattern of LotjaGi2g1v0256800.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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