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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0258300 |
| Transcript ID | LotjaGi2g1v0258300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cullin family protein; TAIR: AT1G69670.1 cullin 3B; Swiss-Prot: sp|Q9C9L0|CUL3B_ARATH Cullin-3B; TrEMBL-Plants: tr|A0A0L9VNM3|A0A0L9VNM3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0258300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:72503486..72507644) extracted from Lotus japonicus Gifu genome v1.2.
AAGTCACACTACTCAACCATTTATTTATATTTACTCTCTCTCTCTTGTTTTTCCTCACATCTCATTTCATTTCTTTCTTC TTCCTTTTATTATTATTATCTCTTGCTTCATCTCTCAAAATTCCCTTTCTCAATTTGAAACCCTAACTTCTCCAATTCCC CTCTTCCGATTCTCCTCCAACCTCTGCTCCTTCTCGATTCCTCCGATTTCCCCTCAACGATGAGCGCCCAGAAGAAGAGA AGTTTCCAGATTGAAGCGTTCAAGCACCGTGTGGTGGTTGATCCCAAGTACGCCGAGAAGACATGGAAGGTTCTTGAGCA CGCCATTAACGAGATTTATAACCATAATGCTAGTGGTCTTAGCTTTGAAGAGCTTTACCGGTTCGCTCGTTATTACCCTT CTTCAATTTACAGTTTTCCGATTGGTTTTGAAATGATTTTGATATGTGTTTGTTTGTATCTTGATATGGATTTTCAGCTA TTGATTATTGTGTTTTGTGCTGTGTGATCTTTCATGTTGGAAACTTGGAATTGCGTTTCAGCTTTCAATCTTTGTGGGTT TTAAGGACTTAGTTTTTAGCATCAATTGGAGTTTGTGTTAATTGACCTTGTTCTTGTATGCAAGTTATACTAAATTGCAG GAATTTTCGTTGTGTGTGTGTGTGTGCGCATGTGTGTGTCTGGGTATGTTCAATCCAAGAAAATGTTATTTCGTTTTTTA ATTTTCGCCGATAAATACGAAGTGTTACTTTTGAATCTCTAACATCAATTGTAGTGTGTTATTTGTGTATCACCAGCTTG TTACATTTTAGGTTGCTTGAGTATGCATTGTGGTCTGTTTGATTGAGAAAATGTTATTTCGTTTTTAATTTTGACTGATA ATTACAAAGTTGTTTGGTACTTTGGATCTTTAATTTCAATTTTAGTGTGTTGTTTGTGTTTCCACCAGGTTGAATGATCT TGTATGCTAGTTAAACTGGGTTGCTTGAATTTATATATGTATGTTTGTGCATTTCTGTATTATGGTCTGTTTGATCTGAG AAAATGTTTTTTCGTTTTTTAACTTTCACTGATAATGACAAAAATGTTATCATATTTTTTAAGATTAGTACAGAAGGTAA TGGAAAATAAAAATACAGTTCCTATTGCCTTTGGCCCTAATCATACTTGTTCTTATCCTTTTTTGGTCGCATTGTGACTT GTAGGCCTTGTCAAGGATTAATGTATGGCATACTTGCATAAGTTCTTAATTTCTTGCCTCACATCTTAGTAGCATATAAT ATTGAAACATTCTCCGTTATGCTATTTGGCTGTCTTAGATTGTTATGCTTTTTGTTTGGTCAACTCACCAGCATTTACTT AGTCTTACTCAGATGGCCAAGCATATGCAAACCATTCTCAGCTCAGCTCATGCCATTTAGTGGGAAGGAAAAAAATCGTT TTCCTTAGACCAAAGCCACAAGCCTTCATTAAACTTGTCATTTATTTACAACTGATCAAATAACAGTAGCTTTATTTGTT GTTATACAACAGGCCTGTTGCCTACATCTACTTTACTTAATGATGGTTGTTACCACTGATCTGCATGTAATCATATCTGG GCACCTATTTCTGAAATTTCTGATCATCATGATCTGTCCATTCAGGAATGCTTATAATATGGTGCTGCACAAATTTGGGG AGAAGCTTTACTTAGGACTTGTGAAGACTGTTACTTCTCATCTAAGAGAAATTTCTCAATCAATTGAATCTGCTCAAGGG GAAGTTTTCTTGGACGAGCTCAACAGGAAGTGGGTAGATCATAACAAGGCATTACAGATGATCCGGGACATACTGATGTA CATGGACCGAACTTACATACCAAGCAACCATAAAACCCCTGTTCATCAGCTTGGTTTGAATCTCTGGAGAGATGAGGTGA TCCATTCCAGCAAAACTCGAGCTAGGCTTCTAGATACACTTCTGGATCTTGTGCTTAGAGAAAGGAATGGTGAAGTAATA AACAGAGGCTTGATGAGAAATATAATAAAGATGCTAATGGATTTGGGTCCGCGTGTTTACGAGGGCGACTTTGAGAAACA GTTTCTTGAAGTTTCAACAAATTTTTACTGCCTTGAGTCCCAGGGATTCATTGAATCTTGTGATTGTGGGGATTATCTGA AGAAAGCTGAGAGGCGTTTAAATGAAGAAATGGAGAGAGTATCCCAATACTTGGATCCTGCAAGTGAATCCAAGATAACT GCTGTGGTGGAGAAGGAGATGATTGAAAATCACATCCACACTCTAGTTCATATGGAGAACTCAGGGCTAGTTAATATGCT TTTGGATGACAAATATGAAGACTTGCAAAGAATGTATAACTTGTTTCGCCGGGTGCTTGCTGGGCTCACAATTGTTAAAG AAGTCATGACTTCTTTTATACGGGATACTGGTAAGCAGCTAGTTTTGGACCCTGAAAGGTTGAAAGATCCTGTGGATTTT GTGCAACGGCTATTGGATTTGAAGGATAAATATGACAAGATCATTAGTATGGCATTTAACAATGACAAGACATTTCAGAA TGCCTTGAATTCCTCTTTTGAACATTTCATCAATTTGAATGCTCGGTCTCCTGAGTTCATTTCTTTGTTTGTGGATGACA AACTTCGCAGAGGTTTGAAAGGGGTAGGTGAGGAGGATGTAGAGATTATACTGGACAAAGTCATGATGCTTTTCCGGTTC CTACAAGAGAAGGATATCTTTGAGAAGTATTACAAGCAACACTTAGCAAAAAGGCTTCTTTCAGGAAAGACTGTATCTGA TGAAGCAGAAAGAAGTTTGATCGTTAAGCTCAAAACAGAGTGTGGATACCAATTTACTTCTAAGCTGGAGAGCATGTTTA CAGACATGAAGACTTCTCATGATACCACACATGGTTTCTATGCATCCCATGGACCTGAGTTGGGGGATGGCCCTACGCTA TCTATTCAGGTGCTTACAACCGGTTCATGGCCGACTCAGCCTAGCCCTCAGTGTAATCTTCCAACTGAAATCCTTGGTGT ATGTGATAAGTTTCGGGCTTACTATCTTGGCACCCACAGTGGAAGGAGATTGTCCTGGCAAACTAATATGGGTACAGCTG ATTTGAAGGCAACGTTTGGTAAAGGCCAGAAGCATGAGCTGAATGTTTCCACATTTCAGATGTGTGTGCTCATGCTTTTC AACAATGCTGATCGGTTGACTTGCAAGGAGATCGAGCAGGCTACAGCAATACCCATGTCAGACTTGAAGAGGTGCCTTCA GTCTCTGGCCTGTGTCAAGGGAAAAAATGTTCTTCGGAAAGAGCCAATGAGCAAGGACATAGCTGAGGATGATGCATTCC TCTTCAATGACAAATTCACAAGCAAGTTCTTCAAGGTGAAGATAGGGACTGTTGTAGCGCAGAGGGAGTCTGAACCAGAA AATCTTGAAACTCGACAGCGAGTGGAAGAAGACCGAAAGCCACAGATTGAGGCAGCAATCGTGAGGATAATGAAATCTAG GCGGACTCTGGATCATAACAATGTTGTTGCTGAGGTCACAAAGCAGCTGCAGTCTCGATTTTTGCCTAATCCTGTTGTTA TTAAGAAACGGATTGAATCCCTTATTGAACGTGAGTTTTTGGAGAGGGATAAAGTGGACAGAAAAATGTACCGCTATCTT GCTTGAACATTATGTCCATTTGTTTATCATGGCATTCTGTCTGTCATATGTTTCAGTATTCTTCAGAAATTGCTGCAATT TTTTTCAGCTTTTTGAATCTCTTTTTTAGCTTGAATCTCTCAACAAAAATATACTTTTCAGTCAACTTGTATTTGGACTT ATTTCATTAACCAATACAACCTGAGCAAGGAGCTCTACCAGAAATGCTCTGAACTGGAAGAAGCTTTACACCGATTTGAG TAGCATACTCTGATAAAAGTTGTGATCATTCACACTTCATTTCTGCTAGTAAAAGTAAAACTGCAGGTGTAAGGGTGTGA ATAGATTATTATTGTTCTGATCGAATTCAGAACTTGTGCTCCGAATTGGTTAGATTTCTGCTATATGTATTTTTTTAATA AAAATAAATTTCATTACAAGTAAAATATCCTCTCATCAATTGAAATACTTATTAAAATATTTTCTTATTTATATTTCAC
CDS sequence (LotjaGi2g1v0258300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCGCCCAGAAGAAGAGAAGTTTCCAGATTGAAGCGTTCAAGCACCGTGTGGTGGTTGATCCCAAGTACGCCGAGAA GACATGGAAGGTTCTTGAGCACGCCATTAACGAGATTTATAACCATAATGCTAGTGGTCTTAGCTTTGAAGAGCTTTACC GGAATGCTTATAATATGGTGCTGCACAAATTTGGGGAGAAGCTTTACTTAGGACTTGTGAAGACTGTTACTTCTCATCTA AGAGAAATTTCTCAATCAATTGAATCTGCTCAAGGGGAAGTTTTCTTGGACGAGCTCAACAGGAAGTGGGTAGATCATAA CAAGGCATTACAGATGATCCGGGACATACTGATGTACATGGACCGAACTTACATACCAAGCAACCATAAAACCCCTGTTC ATCAGCTTGGTTTGAATCTCTGGAGAGATGAGGTGATCCATTCCAGCAAAACTCGAGCTAGGCTTCTAGATACACTTCTG GATCTTGTGCTTAGAGAAAGGAATGGTGAAGTAATAAACAGAGGCTTGATGAGAAATATAATAAAGATGCTAATGGATTT GGGTCCGCGTGTTTACGAGGGCGACTTTGAGAAACAGTTTCTTGAAGTTTCAACAAATTTTTACTGCCTTGAGTCCCAGG GATTCATTGAATCTTGTGATTGTGGGGATTATCTGAAGAAAGCTGAGAGGCGTTTAAATGAAGAAATGGAGAGAGTATCC CAATACTTGGATCCTGCAAGTGAATCCAAGATAACTGCTGTGGTGGAGAAGGAGATGATTGAAAATCACATCCACACTCT AGTTCATATGGAGAACTCAGGGCTAGTTAATATGCTTTTGGATGACAAATATGAAGACTTGCAAAGAATGTATAACTTGT TTCGCCGGGTGCTTGCTGGGCTCACAATTGTTAAAGAAGTCATGACTTCTTTTATACGGGATACTGGTAAGCAGCTAGTT TTGGACCCTGAAAGGTTGAAAGATCCTGTGGATTTTGTGCAACGGCTATTGGATTTGAAGGATAAATATGACAAGATCAT TAGTATGGCATTTAACAATGACAAGACATTTCAGAATGCCTTGAATTCCTCTTTTGAACATTTCATCAATTTGAATGCTC GGTCTCCTGAGTTCATTTCTTTGTTTGTGGATGACAAACTTCGCAGAGGTTTGAAAGGGGTAGGTGAGGAGGATGTAGAG ATTATACTGGACAAAGTCATGATGCTTTTCCGGTTCCTACAAGAGAAGGATATCTTTGAGAAGTATTACAAGCAACACTT AGCAAAAAGGCTTCTTTCAGGAAAGACTGTATCTGATGAAGCAGAAAGAAGTTTGATCGTTAAGCTCAAAACAGAGTGTG GATACCAATTTACTTCTAAGCTGGAGAGCATGTTTACAGACATGAAGACTTCTCATGATACCACACATGGTTTCTATGCA TCCCATGGACCTGAGTTGGGGGATGGCCCTACGCTATCTATTCAGGTGCTTACAACCGGTTCATGGCCGACTCAGCCTAG CCCTCAGTGTAATCTTCCAACTGAAATCCTTGGTGTATGTGATAAGTTTCGGGCTTACTATCTTGGCACCCACAGTGGAA GGAGATTGTCCTGGCAAACTAATATGGGTACAGCTGATTTGAAGGCAACGTTTGGTAAAGGCCAGAAGCATGAGCTGAAT GTTTCCACATTTCAGATGTGTGTGCTCATGCTTTTCAACAATGCTGATCGGTTGACTTGCAAGGAGATCGAGCAGGCTAC AGCAATACCCATGTCAGACTTGAAGAGGTGCCTTCAGTCTCTGGCCTGTGTCAAGGGAAAAAATGTTCTTCGGAAAGAGC CAATGAGCAAGGACATAGCTGAGGATGATGCATTCCTCTTCAATGACAAATTCACAAGCAAGTTCTTCAAGGTGAAGATA GGGACTGTTGTAGCGCAGAGGGAGTCTGAACCAGAAAATCTTGAAACTCGACAGCGAGTGGAAGAAGACCGAAAGCCACA GATTGAGGCAGCAATCGTGAGGATAATGAAATCTAGGCGGACTCTGGATCATAACAATGTTGTTGCTGAGGTCACAAAGC AGCTGCAGTCTCGATTTTTGCCTAATCCTGTTGTTATTAAGAAACGGATTGAATCCCTTATTGAACGTGAGTTTTTGGAG AGGGATAAAGTGGACAGAAAAATGTACCGCTATCTTGCTTGA
Protein sequence (LotjaGi2g1v0258300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSAQKKRSFQIEAFKHRVVVDPKYAEKTWKVLEHAINEIYNHNASGLSFEELYRNAYNMVLHKFGEKLYLGLVKTVTSHL REISQSIESAQGEVFLDELNRKWVDHNKALQMIRDILMYMDRTYIPSNHKTPVHQLGLNLWRDEVIHSSKTRARLLDTLL DLVLRERNGEVINRGLMRNIIKMLMDLGPRVYEGDFEKQFLEVSTNFYCLESQGFIESCDCGDYLKKAERRLNEEMERVS QYLDPASESKITAVVEKEMIENHIHTLVHMENSGLVNMLLDDKYEDLQRMYNLFRRVLAGLTIVKEVMTSFIRDTGKQLV LDPERLKDPVDFVQRLLDLKDKYDKIISMAFNNDKTFQNALNSSFEHFINLNARSPEFISLFVDDKLRRGLKGVGEEDVE IILDKVMMLFRFLQEKDIFEKYYKQHLAKRLLSGKTVSDEAERSLIVKLKTECGYQFTSKLESMFTDMKTSHDTTHGFYA SHGPELGDGPTLSIQVLTTGSWPTQPSPQCNLPTEILGVCDKFRAYYLGTHSGRRLSWQTNMGTADLKATFGKGQKHELN VSTFQMCVLMLFNNADRLTCKEIEQATAIPMSDLKRCLQSLACVKGKNVLRKEPMSKDIAEDDAFLFNDKFTSKFFKVKI GTVVAQRESEPENLETRQRVEEDRKPQIEAAIVRIMKSRRTLDHNNVVAEVTKQLQSRFLPNPVVIKKRIESLIEREFLE RDKVDRKMYRYLA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 733 | 728 | 0.0 | – | |
| PANTHER | 6 | 733 | 728 | 0.0 | – | |
| Gene3D | 15 | 144 | 130 | 1.3E-43 | – | |
| SUPERFAMILY | 22 | 372 | 351 | 1.94E-113 | ||
| Pfam | 29 | 631 | 603 | 3.9E-218 | ||
| Gene3D | 145 | 264 | 120 | 1.5E-38 | – | |
| Gene3D | 265 | 372 | 108 | 1.4E-33 | – | |
| SUPERFAMILY | 368 | 641 | 274 | 3.53E-95 | ||
| Gene3D | 373 | 485 | 113 | 2.3E-40 | – | |
| ProSiteProfiles | 374 | 602 | 229 | 54.585 | ||
| SMART | 404 | 551 | 148 | 4.6E-63 | ||
| Gene3D | 489 | 643 | 155 | 2.4E-51 | – | |
| Gene3D | 644 | 733 | 90 | 1.8E-33 | ||
| SUPERFAMILY | 645 | 733 | 89 | 2.45E-27 | ||
| SMART | 660 | 727 | 68 | 8.6E-35 | ||
| Pfam | 663 | 723 | 61 | 2.6E-26 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. | ||
| Molecular function | Ubiquitin protein ligase binding | Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins. |
Expression pattern of LotjaGi2g1v0258300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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