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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0264100 |
| Transcript ID | LotjaGi2g1v0264100.4 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent chaperone ClpB; TAIR: AT5G15450.1 casein lytic proteinase B3; Swiss-Prot: sp|Q9LF37|CLPB3_ARATH Chaperone protein ClpB3, chloroplastic; TrEMBL-Plants: tr|G7KLS1|G7KLS1_MEDTR Chaperone protein ClpB3; Found in the gene: LotjaGi2g1v0264100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:73346920..73353704) extracted from Lotus japonicus Gifu genome v1.2.
ATTTATAGGCAACATGCCTCACTCACTAACCCCCCACTAATTAATAAACTCTCACTAATTGAGCATGTCTAACAATTTTC CTCACATTTTCGCTGTATTGGTCTTTATTATACCCTCTACAACTCCTGCTCTTATATCCTTTAATGTGTTCTATAAGAAT GTAATATTTATCTTGTTTTATTCTCCTTTTTGAATTGTGACTTGGCCAGGAGTTGTAAACTTGATCTGATTATTCTTGTC ATTTTTTCAGCTTATATCACTTGATATGGGAGCACTTATTGCTGGAGCAAAATATCGGGGAGAATTTGAGGATAGGCTGA AAGCTGTTCTCAAAGAAGTAACAGAATCTGATGGTCAGACTGTTCTTTTCATCGATGAGATTCATACGGTTGTTGGGGCA GGTAATGGGATTTAAAGTTTTCCATTTAAAGGCAGCTGATGTTTTTGGTATTTAAAATCTGTTTGAAGGGTCTAGACAAT TGTTCTCTATTTCTTTTGACTTCTGTTTTTGTAACGCCCCGATTTCTCGAGTGTTACACAGTAACTAATTAACCAATTTT CGTAAAGAGTTTTCGTCGATTCACTTATTAATCTTGAATTAATGATAAAAGTTCAATTTTACAAAATTCTCGAAACTTAA CCATTTCAAACTTGCGGAAATAAACATCAACCTAAACCTCAAACTTTATTAATCATTGAAAAGAGTATGAAATAAATATC CGGAAGAAAACTTCAAAGTAAATTACATCAAGTTAAACTATCTCAACTAAAATAAAGTAATGGTTCAATACTTCCAAAAC TCGGTACTCTCAACCCAAAAGAAAAATGGATGTCTCACAACCCAACCATATCCTTGGCCCCTTCCTCTTTATCTTCTTCC TCTTCATCAGAAGTGTAGTCGTCCTCCGGTATTGGCACGTCACATAGCATCAACTCCCAAGAATGAGTCATCGCCATTAT CTTCACGACCATCTACCCCCCCAAATAAACACATAGCAAACAAGCAGGGTCAGGTCCAACAAAAAGAATGATAATGACAA AATCAACAACAACATATATAATATAAGTACATTATATGTCTTTTATGGGAAAGAGTCAGTTACTAACGGAATCTCACTTC ACACAACCCACCAAAACTTCCATGGCCATCTTCGTGCTTCCGCAGAGGCACGGTTATCACGGTGACCGCAGTCAACCAAA TCACGTGGAGCCGCAATGATCCACAAAAGTTCACGGTGACCGCAGTCAACCAAATCACGTGAAGCCACACCGGCCCACAA GGTTCACGGGAGACCGCAGTCAACCCAAATAACTCCCTCGCGTGCAAGGTACCATCGTTCTCATGGACCATAGTCTACCT GACCTATGTCCAAATTATTCACATTTACTTGCAAGCGAGTTTATTACACTTTTCTCTTTGTTAAGTCTCTAAAGTCAATC CTAGAGTCTTATCATACTCTTTATACAACAACCTTCACAACACAACATTCACGGGTTACAAGGGAATTACGGCTAGGTGA GCGACCCTTGAACCATTAACTGAGAAAATAAATATAATCCACGTAAAGGAACGCAAGAACATTCACTCATGCATAATATA TCATCGCAACTTCAACATATTGACAGCAGAAACAACTTTCACAAAAATAGAGCCACAGAATGCATCTTTCAACCAAAAAT CACGTATGATACCTTTCTAGAAAGCTATTTTAAATATCTACAACTCTCTAGTTACACACTTGTTCATTTGAGTCCTATAA TTAGGTGATATTAGGCCTTAAAGCTAACTGTCCGGAACAGGAAAAACAGCAGGTGTGACAGTTACTAAACACGACCCCCA GATCACATTACTAAACCAAAAATTATGTTCTTTATATGCATAGAAAGCCAATTCGAAAATCTACAATTTTCCAGTTTATC CCTTTTTCATTTGAGACCCCGAATTAGGTGTAATTAAGCTCCAAAACTCGCTGTCCAGTACAGGAAACTGGCAGAGATAC TTTTGCCTTCAAATTAATTTTTCAACCATTCAAGTCCCAAAGTTTTAAACCATATTCCAGCAGCAAGAACCACATATCAT ATATCATATATCATGCTTAAATTTCCAGAACCAAGATAACCATCAATTCTAGCACAAAAGGCAGATCTAAGCATATAAAT CTTCAATCATTTTAATCAAGCAAAGTCATAGAAGAAACGGTAGTTGTAGTGATGATTAATGGAGAATCATGGCATCAACA TTTCATCTCAAATCAGAAGCAAAACATCAAGATCTCAAGGCAGAAAAAAAACAGCAAGCATCATGAACATAAAACTCTTG CAAAAGCAATCATGTTCATGGCTTTTCTCATAGTAAAACATGGCAAATACCCTAGGCAATCTACCCAATCCTAGGACCAG CCCTTACCTTTGTCCTTAGGCTTGAAGAAAAGATGAAATTGAAGAGCAACGTTCTGGTTTCTCTCCTCTTCTCCCACGCG TGACCTTCCTCTCTCCCTCTCGCTCGCGAACTCCTTCTCCCTCTTGTGCGAACACGTCGACGGTGGTGGGGCTTGGGACG GTGACGGCTAGGGTGCAAGGGGAAAGTTTCTCTCACTCTTTCTCCTCTGTTTTACGTGTTTCAGAAGTGCACCAGGTTTC TTTCTTCAGAATAGTGTGAAAAGAAACCCCTTTTCCCCCCAAACCCCTACATAGCCCGCGTCCCCTCTCTCCCTCTCTTG GGCTAGGGTTTGTTTTCCTTCAAGCCCGACCCAAGTCAAAACCCTTGACCCCATCACTTAAGAACTTACTCAGGTCTGAA ACTAATCAAAACCCTCAGCCCTTTTTAGTAATATCACGATCACACTCGGAATTGAAAGGAAACAAAACAATTAAATTCGC TGGTACTGTACAGCCAGGACCATCGTCACTAAACCGATGATATCTCGAGCTACAGAGGTCGGAATGACCTGATTCCACTT CGAGAATTTTCTAGACTTAAAGGGCTACAACTCTCATGAAGGAAGTTTTCCCAAATGAAGTCGTTAAGACCCTCTAAAAA TTCACCCAAGTTGACAGTTCAAATCTGCCAGTTATCAAACATAGCCAAAAACTTCAATTTTATTCAAACTTCCATAAAAT TTGTTCCAAGTTGAACTTAGGGCCTTACAGTTTTTCTCTCTCTCTAGCACATGATTGGCATATGAAAACTCTTTAGATCA ATGAATGTTCACAATTCACATCATAGAATACGATACGTTTCAATTCATTTATTTTCGTAACATGTTGCATATAGTTTTAG TTGAGGCCTGCAAATGGTGACTTGAAATTGATGTTGAATTTTAATTTGATTGCTATTATAATCTATCATATGCTAGGTGC TACAAATGGTGCTATGGATGCTGGTAATCTCTTAAAGCCTATGCTGGGTCGTGGAGAGCTGCGATGTATTGGTGCGACAA CATTAGACGAGTATCGGAAGTATATTGAGAAGGACCCAGCATTGGAGCGTCGTTTCCAGCAAGTTTTTGTTGACCAACCT TCAGTTGAAAATACCATTTCAATATTAAGAGGACTGCGGGAAAGATACGAGCTACATCATGGAGTTCGCATTTCTGATAG TGCACTTGTGGAAGCTGCAATTCTCTCAGACCGATACATAAGTGGGAGGTTTTTGCCTGACAAAGGTAGTAACTACTAGA AACAAACTCTAGTAAATAGTTACTGTTTTAATATCATGAAACCTTATAAGTTTTGTAAGAATGAGGTTTGGATTCTTGAT TTGAACATTTTCACTTATTTAAGCGTGCAGTATGAAAATATGTGACTTCAATAGAGGGATTATGTGAAATTTACATATGT CTGTTAAAGGACAAGTCATTGCTGTTGCTCGTGAAGCTGTGGGAACACCAATGCTAAGGGAATATAATATCATCATGTTT AAAGAATAAATTTTGTCAAGTGTTAATTGAAATTGTTTTGTCAAGATCTTGAAAGCTAAATAGCACTTCCAAACTGGTGG GAATATGCACATAACATGAGTCTATATCATTTTCAAAAGATTGCATTTGAATTATCAATATATAGCTGAGTTTGATTATT TTTTTAAATCTAACTTGTTGAAATTGTTATTGGAAGTATATCATAATATCATTGTTGAATATTAGAATATCTGAAAGTAT CTTGGATGGTCTCTTATGAGTGGTTTCCATATTTCATTATATCCTCATTTTATTAGGATTAGGAGTCTAGTACTGGTATA AGTAAGGGTTAATACTTAATATATTTTCTTTTGTATTATCAAATCAATATCAATTTCAGAATATTCATAAGCTTACTCTA TCTTTTACTTACCCTCTATCTTAATCCTTGTAATTTTAACAATTAATGTTAAATTGTTGCATTTTCTTAGTAGACTGGCA TCAATGAGCACTAATTGCTAGCTACTTCTAAATTACAGCTATTGATCTGGTTGATGAAGCAGCTGCTAAACTGAAGATGG AAATTACTTCTAAACCTACTGCACTTGATGAGATTAATCGGTCAGTCTTGAAACTAGAGATGGAGAGACTCTCTCTCATG AATGATACAGACAAGGCATCTAAAGATAGGTTAAATCGTCTTGAGACAGAACTCTCTCTCTTAAAAGAGAAACAGGATGA ACTGACAGAACAGTGGGAGCATGAAAAGTCTGTGATGACTCGTCTTCAATCAATTAAAGAAGAGGTGACTTTTATAAATG TTGCTACAGGCGGTCTTCCCTCTTTATTAATATAAGTGCACTTTTAAAGGATTAGCAGTGTGAATGTAGCTTTTTGCTTG GTTTCCTTACATTGAACAATTAGTGCAGGTGTACATGTTTATTTAGTAATTATGCATAGCAGCATAGGGATGAATAATTT GTATAAAATATGATTTTTATGAATTGGAAGATGAAAACCTGATTCTGATAATTTCCATATTTGCTAATGCAGATAGATAG AGTAAATCTTGAGGTTCAACAGGCTGAACGGGAGTATGATCTTAATCGTGCTGCTGAATTGAAGTATGGCAGTATAAACT CCTTGCAACGACAACTGGAAAGTGCAGAGAAGGAGTTACATGAATATATGAACTCTGGCAAGTCTATGTTGAGAGAGGAA GTTACAGGCAGTGATATTGCTGAAATTGTAAGCAAGTGGACTGGTATCCCCATTTCAAAACTTCAACAATCAGAGAGAGA GAAGCTGTTGTTTTTAGAGGATGAGCTCCATAAACGTGTTGTAGGTCAAGATCCTGCTGTCAAGGCTATAGCTGAGGCAA TTCAACGGTCAAGAGCAGGTCTTTCAGATCCCCATCGCCCAATCGCCAGTTTCATGTTCATGGGACCCACGGGTGTAGGA AAGACAGAGCTAGCCAAGACCCTTGCTTCCTTCATGTTCAATACAGAAGAAGCACTTGTACGAATTGATATGAGTGAGTA CATGGAAAAACATACAGTTTCGAGATTGATTGGGGCTCCACCTGGATATGTTGGGTATGAAGAGGGAGGGCAGCTAACAG AGACAGTTCGCCGCAGACCATATGCGGTAATTTTGTTTGATGAGATTGAGAAGGCACACTCAGATGTTTTCAATGTATTC CTTCAAATTTTGGATGATGGAAGAGTAACCGATTCACAGGGTCGCACCATAAGTTTTACCAACACTGTTATCATCATGAC CTCAAATGTTGGATCTCAGTACATTCTCAACACAGATGATGACACTGTGCCCAGTGAGTCCAAATATGAAACCATGAAGC TGCGGGTAATGGATGCTGCAAGATCTATCTTTCGCCCTGAGTTCATGAACAGAATTGATGAGTATATTGTCTTCCGGCCT CTAGACCGTGACCAAATAAGTAGCATTGTCAGGTTACAGGTAATTCCACCCCCACTGATCCATTCATGATCAGACTCCCC CCCTTATATCCTGTGAAATGACTTAAGTCTATGTTGATAATGAAAGCCACATAAAATGCTGGTTAGAATTATTTTTATAA ATTTAGGATGCATGGGTCAACTTGCATTTTCTTTAAACTAGTCTGAGATTAAGTTGATGCACTGCCAAACTTTGTGAAGC TTGATCTTAAAATATTAACACCCAAGTTCCTACTGAAATAAGATGCATTGTTTGCACTTTTTTTGTACGATTTCTACCGT ATATTGGGCTGTTATAACTTTTTTTGTACATTCTATATAGAACGCTAAAAGCTTTTAAGCACACATTCTTTCATTGCTAA GTTTCCCTAGATCTTATTTCTCATATATTGGGCTGTTAGAGAGTAGTGTTCATGTTAACTGTCACGTGTCTGGTGTCTTT GTTGTACTGATGTATTAAGTTACTAGGTGAAGAAATAGGAAATCTGTCAACTTCATTAACTCTTCTTCATTCGAATGTTT ACTAGTAACTGTGTTGCATGGTATTTTGCATCCCAAAACTCACTTTTAAAGTACATTACAGTTGGAGCGCGTGCAGAAGA GAATCGCAGATCGCAAGATGAAAATCCAAGTAACAGAAGCTGCTATCAAACTTCTTGGAAATTTGGGGTATGATCCAAAT TATGGTGCCAGGCCAGTGAAACGAGTGATTCAGCAAAATGTGGAGAATGAACTTGCCAAGGGTATTCTTAGAGGAGAGTT TAAGGATGAGGACACAATTTTGGTAGACACAGAAGTTACAGCATTTGCCAATGGTCAACTTCCCCAGCAAAAGCTAGTGT TTAGGAGGGTTGAGACCGACTCTAAATCCACTGCTAAATACAGCCAGGAACCACAAATTCTGTGA
CDS sequence (LotjaGi2g1v0264100.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGCACTTATTGCTGGAGCAAAATATCGGGGAGAATTTGAGGATAGGCTGAAAGCTGTTCTCAAAGAAGTAACAGA ATCTGATGGTCAGACTGTTCTTTTCATCGATGAGATTCATACGGTTGTTGGGGCAGGTGCTACAAATGGTGCTATGGATG CTGGTAATCTCTTAAAGCCTATGCTGGGTCGTGGAGAGCTGCGATGTATTGGTGCGACAACATTAGACGAGTATCGGAAG TATATTGAGAAGGACCCAGCATTGGAGCGTCGTTTCCAGCAAGTTTTTGTTGACCAACCTTCAGTTGAAAATACCATTTC AATATTAAGAGGACTGCGGGAAAGATACGAGCTACATCATGGAGTTCGCATTTCTGATAGTGCACTTGTGGAAGCTGCAA TTCTCTCAGACCGATACATAAGTGGGAGGTTTTTGCCTGACAAAGCTATTGATCTGGTTGATGAAGCAGCTGCTAAACTG AAGATGGAAATTACTTCTAAACCTACTGCACTTGATGAGATTAATCGGTCAGTCTTGAAACTAGAGATGGAGAGACTCTC TCTCATGAATGATACAGACAAGGCATCTAAAGATAGGTTAAATCGTCTTGAGACAGAACTCTCTCTCTTAAAAGAGAAAC AGGATGAACTGACAGAACAGTGGGAGCATGAAAAGTCTGTGATGACTCGTCTTCAATCAATTAAAGAAGAGATAGATAGA GTAAATCTTGAGGTTCAACAGGCTGAACGGGAGTATGATCTTAATCGTGCTGCTGAATTGAAGTATGGCAGTATAAACTC CTTGCAACGACAACTGGAAAGTGCAGAGAAGGAGTTACATGAATATATGAACTCTGGCAAGTCTATGTTGAGAGAGGAAG TTACAGGCAGTGATATTGCTGAAATTGTAAGCAAGTGGACTGGTATCCCCATTTCAAAACTTCAACAATCAGAGAGAGAG AAGCTGTTGTTTTTAGAGGATGAGCTCCATAAACGTGTTGTAGGTCAAGATCCTGCTGTCAAGGCTATAGCTGAGGCAAT TCAACGGTCAAGAGCAGGTCTTTCAGATCCCCATCGCCCAATCGCCAGTTTCATGTTCATGGGACCCACGGGTGTAGGAA AGACAGAGCTAGCCAAGACCCTTGCTTCCTTCATGTTCAATACAGAAGAAGCACTTGTACGAATTGATATGAGTGAGTAC ATGGAAAAACATACAGTTTCGAGATTGATTGGGGCTCCACCTGGATATGTTGGGTATGAAGAGGGAGGGCAGCTAACAGA GACAGTTCGCCGCAGACCATATGCGGTAATTTTGTTTGATGAGATTGAGAAGGCACACTCAGATGTTTTCAATGTATTCC TTCAAATTTTGGATGATGGAAGAGTAACCGATTCACAGGGTCGCACCATAAGTTTTACCAACACTGTTATCATCATGACC TCAAATGTTGGATCTCAGTACATTCTCAACACAGATGATGACACTGTGCCCAGTGAGTCCAAATATGAAACCATGAAGCT GCGGGTAATGGATGCTGCAAGATCTATCTTTCGCCCTGAGTTCATGAACAGAATTGATGAGTATATTGTCTTCCGGCCTC TAGACCGTGACCAAATAAGTAGCATTGTCAGGTTACAGTTGGAGCGCGTGCAGAAGAGAATCGCAGATCGCAAGATGAAA ATCCAAGTAACAGAAGCTGCTATCAAACTTCTTGGAAATTTGGGGTATGATCCAAATTATGGTGCCAGGCCAGTGAAACG AGTGATTCAGCAAAATGTGGAGAATGAACTTGCCAAGGGTATTCTTAGAGGAGAGTTTAAGGATGAGGACACAATTTTGG TAGACACAGAAGTTACAGCATTTGCCAATGGTCAACTTCCCCAGCAAAAGCTAGTGTTTAGGAGGGTTGAGACCGACTCT AAATCCACTGCTAAATACAGCCAGGAACCACAAATTCTGTGA
Protein sequence (LotjaGi2g1v0264100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGALIAGAKYRGEFEDRLKAVLKEVTESDGQTVLFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRK YIEKDPALERRFQQVFVDQPSVENTISILRGLRERYELHHGVRISDSALVEAAILSDRYISGRFLPDKAIDLVDEAAAKL KMEITSKPTALDEINRSVLKLEMERLSLMNDTDKASKDRLNRLETELSLLKEKQDELTEQWEHEKSVMTRLQSIKEEIDR VNLEVQQAEREYDLNRAAELKYGSINSLQRQLESAEKELHEYMNSGKSMLREEVTGSDIAEIVSKWTGIPISKLQQSERE KLLFLEDELHKRVVGQDPAVKAIAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKTLASFMFNTEEALVRIDMSEY MEKHTVSRLIGAPPGYVGYEEGGQLTETVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTISFTNTVIIMT SNVGSQYILNTDDDTVPSESKYETMKLRVMDAARSIFRPEFMNRIDEYIVFRPLDRDQISSIVRLQLERVQKRIADRKMK IQVTEAAIKLLGNLGYDPNYGARPVKRVIQQNVENELAKGILRGEFKDEDTILVDTEVTAFANGQLPQQKLVFRRVETDS KSTAKYSQEPQIL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 643 | 643 | 0.0 | – | |
| Gene3D | 1 | 106 | 106 | 2.9E-38 | – | |
| PANTHER | 1 | 643 | 643 | 0.0 | – | |
| CDD | 1 | 100 | 100 | 3.28148E-8 | – | |
| SUPERFAMILY | 3 | 308 | 306 | 1.0E-70 | ||
| Pfam | 8 | 95 | 88 | 1.9E-5 | ||
| ProSitePatterns | 53 | 65 | 13 | - | ||
| Pfam | 101 | 203 | 103 | 8.5E-34 | ||
| Gene3D | 107 | 307 | 201 | 1.9E-71 | – | |
| Coils | 193 | 220 | 28 | - | – | |
| Coils | 231 | 292 | 62 | - | – | |
| SUPERFAMILY | 309 | 615 | 307 | 1.05E-81 | ||
| Gene3D | 312 | 532 | 221 | 4.3E-87 | – | |
| CDD | 334 | 533 | 200 | 6.89854E-17 | – | |
| Pfam | 359 | 527 | 169 | 6.0E-57 | ||
| SMART | 360 | 535 | 176 | 1.6E-8 | ||
| PRINTS | 364 | 382 | 19 | 7.7E-41 | ||
| ProSitePatterns | 394 | 412 | 19 | - | ||
| PRINTS | 409 | 427 | 19 | 7.7E-41 | ||
| PRINTS | 438 | 456 | 19 | 7.7E-41 | ||
| PRINTS | 471 | 485 | 15 | 7.7E-41 | ||
| Gene3D | 534 | 631 | 98 | 5.1E-28 | – | |
| Pfam | 534 | 613 | 80 | 1.4E-25 | ||
| SMART | 534 | 628 | 95 | 6.2E-34 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi2g1v0264100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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