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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0421600 |
| Transcript ID | LotjaGi2g1v0421600.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA mismatch repair protein mutS, putative; TAIR: AT4G17380.1 MUTS-like protein 4; Swiss-Prot: sp|F4JP48|MSH4_ARATH DNA mismatch repair protein MSH4; TrEMBL-Plants: tr|A0A151TJF2|A0A151TJF2_CAJCA MutS protein isogeny 4; Found in the gene: LotjaGi2g1v0421600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:91962709..91967106) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTTTCAGATAGAGTATTATGCCACTTCTGCTTTAAGCCGAAGAAAGATACAATTGAGGCCCTAGCAGTTGATCGTGC TAAAAAGAGTCAAATGCTTGTCTCGAGTGTAATCCTCCTTAAAACTGCTTTGGATGCCCTTCCTTTACTGTCTAAGGTAC CTCTCTCACAAACCCACATTAGAGTCCCTAAAGTAATCAAATAAAGAGAAGAGGTTGGTTACAGAAGATCCTTTCTTCTG ATATATCAGGTGCTTAAGGATGCGAAAAGCTCCCTTCTTTCAAATATCTACAAGTCAGTTTGTGCAAATGAAAAATATGA TCGTATTAAGGAAAGGTATGCTTAGATTTTCTTCTAGCCATGCATATATGGCCATATGCAACAGTTACGTGTTAGATGAT TAATGCATTATATGCAAATCCATTTATTACTTGAGTTAGTATTGTTTGAAGCTGCTTATAAAAAAAGTATTGTTTGAAGC TGAAATGAGGGGGGCAGACAGACTAGAATATTCAAAGTAAAATATTACATAAATCAAATAATCAAACAGGTATTTGTTAA TGTTCTCCATATTGCAAAGGCATGACAAAGTAAATATTCATGTAAATGTTCTTCCTCTGTGATATAGTTCCTGAATAATA GGAATTGCTCTGCCCTAATTCTCTGTACAACACACAGCGTACAATAGGTCAATCCTTATCTACGATACAAATGATTTGTT TTCTATCTATTGCTTTTAAATCTAGGATATTTGATTGAAAGCTTTAAACCAACCAAAGTCCCTTTGGTTTAAAATGAACA ATGCACAAACCTTCCCAATGGACAGTGCACAAAGCTTAAGCTGTTAAGTGGAGACATATCAATAGTTTTATATCTAACAA TATTATAAATAAAAACATCATGTGGTGTAATTACATTCAATTCTCATGTCTTTGGGAGTTTTGTCACAGGATAGGGGAGA TTATTGATGAAGATGTGCTTCATGCACGGGTTCCTTTTGTTGCTTGCACTCAGCAATGCTTTGCTGTCAAGGCAGGGATT GATGGTCTCTTGGATATTTCACGAAGATCGTTTTGTGAAACCAGTGAAGGTTTTATAAATTTCCTTGCTTGAGTATTCTT TCTTGTGAATAGTGTCATCCCTTTGACTATGACATACCATATGAGGCTTTCCTAAAGCATTTGATGTTACTTGTGCAGCC ATCCACAATCTTGCAAACAATTATCGAGAGGAATTCAAGTTGCCCAATCTAAAGCTTATCTTTAAAAACAGGCAGGGATT CCACTTTGTTATACCACAGAAGAATGTTCAAGGAAAGCTTCCAAGCAAGTTTATTCAGGTTACTTTTTTTGGGGCTATAT TTGTAAGAACATGCTTTTAAAGTTCTCTTCTCCCTGAACCTAATGTTCTTTTTTACTTATATTAGGTTGTAAAACATGGG AACAACATTCATTGTTCAACTCTGGAACTAGCATCTGTGAGTAACTTACTCATTTGGATTTTATAAACATATTATTCTGT TCAACTTAAATAATGGCCAACGGATAATACTCACACACACACACACACATGACCTGAAGTTGTACTTGGTTGGCAACATA TTTCATATTTGGTTATAGTTCTACTAATGTACATGCATAAGACAGCTCATATGCTAAGGACGCTTATAAGTTTTCATACA CAAACTGAAACATAGTCCAAGCTTCTGATCGAAAATGACACATAAAATGTAGAGGCATTTGTTTGATATGTTACCACTCT ATAAGATGTTACTTTTTTTGGAAGCATGTTTGGGCTCTTGAAAAGTCTCTTCTTTTATTTTAATAAAATTCGCAGTTGAA TGCTAGGAATAAATCTGCAGCTGCAGAATGCTATACAAGAACAGAGGTTTGTCTGGAAGGTAGTACTTGATGTACTGACA TGTGCCAACTGACAATACAAACTTTCACAGGCTCAGCATATTTGCTATTTTTTTATTTGTGCATGAATTATACAACTCTT GTTGACTTTGTCAAGTGCCAAGAAAGGAAACTAATGAAAAATCATTTTGAATGGGAAAATTCAGGTTATTGCATGCCATC ACCAATCATTAAATAAACTTTGTTTCTCATGGGATTTAGGAAGGAATTTTAAGTTGTAGGCCTTTGTAAGAAGTAATGAG ATGCCCAACTTCTCAACATCAGAGTCCTATCTTATTACTAATGCATATTATCTGCATTAACATGTAACAGTCTCTTGTTA TGTTTGTTCAACTCGTTAATATCATGGAATTGCAGAACTTATGGATGCCATTCGTGAGAATGTCTCTGTGTTGACACTGC TTGCTGAGGTGCTCTGCTTGTTGGATATGATTGTGAATTCATTTGCACATATGATTTCCACAAAGCCTGTTGATAGATAT ACAAGACCAGAATTTACAGGTAAAAAATTTGGTAATTTCTGGAACATATTTGCACTTCAATGGAGAACTTCTTAATTGAT ATTTCACTCTATTTTCTAGAGAATGGACCAATGGCAATTGATTCTGGTAGACATCCGATCCTGGAGAGCATACACAATGA CTTTGTAGTACGTAACAAAAAAAACACTTATCTTGTTTTAGAAGGATTTCTTTTAGTAAAGTAATCTTTTGCATTGCAGC CCAACAATATATTTCTGTCTGAAGCCTCAAATATGGTGATTGTGACCGGGCCCAATATGTAAGAAATTTTCTGTTTTACA TCCAACGAGTACTGTTAAATTTGGTGATCCAGATGAGTTTAACTGGTCTGTAAAATTTGTTTGCGAATCTTGGCTGAATG CTAAGGAAACACCTATTGGCCTGTTATTGATGAGCAAACGAAGCACAAAAGATAACAATGCAATTAGAGTATGTTACTTT GAAAACTCTGATGAACTATAAATGTTGAAAGTGGAACTAGGCTTAATGATGCATAAAAGCTTGTCTGGATGGAAAGAGTA TAAATGTTTACATGAAGAATGTCAAGTTTTGAGATTTATTTTCTGTATTCCTTTCCCCCAGGAGTGGAAAGAGTACTTAC CTTCAACAAGTGTGTCTCATAGTCATTCTTGCTCAAGTTGGGTGTTATATTCCTGCCCGCTTCTCAACTCTGAGGGTGGT TGATCGTATGTTTACGAGGATGGGTGCAGTTGATAATCTTGAATCAAACTCGAGCACAGTATGATTTCTAGACAGCTCAT TGTGAAGCTATTTGATCCTGTTCATTTTGTTTTGAATTATATATGAAGTTATCTGGTTGTGCAGTTCATGACAGAGATGA AGGAGACAGCTTTCATCATGCAAAATGTCTCACATAGGTAACACACCTTTTGATCTTTTCACTCCAGGTAAACATGATAG CTTTTTGCTAGATATTTTTGTTGGATGCAGGAGTCTGGTTGTTATGGATGAACTTGGGAGGGCTACTTCATCGTCTGATG GATTTGCAATTGCATGGAGTTGCTGCGAGCATCTTTTGTCACTTAAAACGTAATTATTTCTTGATTTTCAATTATCAGTA GGCATTTGTAGCAACTTCAAGACATGGGTTTCTGATAGCTAATAAATTGAATGTCTTAGTTTGCTCTAAAAATTCCTTTA CTATGTGGGATTGTCATCACTCATCGAAGGAACAGGTTTTTGTAATTGATAGACAACTATACTTCTGGGATTGTCCTGAC TTTTTTTCTTCTTTCTTTCTTCGCCGTCAGGTATACCATATTTGCCACTCATATGGAGAACATGGCAGAATTAGCTACAA TCTATCCCAACGTGAAAATTCTTCACTTTCACGTCGACTTGAAAAACAACCATTTAGACTTCAAGGTGATGTCTGTTATA TTTTTTTTCTTCTTGAGTTGGGAATAATATCCACTAACTGACATTCTGTTTTTCTTAGTTTCAACTTAAAGAAGGACCAA AGCATATCCCCCATTATGGCCTTCTCTTAGCAGAAGTGGCAGGATTACCAAGTCCGGTTATTGAGAATGCCAGAATGATC ACATCTAGGATTTCAGAGAAGGTGATTATAACCACACTTAAAAAAAAATATTATGTTAATCTAAACTAGGCAGTAGGCAA AAAAGAAAAGATACTTAAACTTGGTTCCTTAAATTGGTTAATTAACTGTTTTTTGCTTGATTTTGATATCTGTTGACAAA TTATTGAGTTTATAGAGCTAACTGTCAAACATAAAATGAGTACTAACATGATATGGACTTGATGTGTCATTAGGAAATGA GGAGGATGAAAGTCAATTGCTTGCAATATCATTCTATACAGAGGGCATATCATGTTGCACAACGCTTATTATGCCTGAAA TATTCTAATCAAGATGAGGACACGATTCGGCAAGCTTTGCGAAATCTTAAGGAAACCTGCCTCAACCATAAGCTTTGA
CDS sequence (LotjaGi2g1v0421600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTTCAGATAGAGTATTATGCCACTTCTGCTTTAAGCCGAAGAAAGATACAATTGAGGCCCTAGCAGTTGATCGTGC TAAAAAGAGTCAAATGCTTGTCTCGAGTGTAATCCTCCTTAAAACTGCTTTGGATGCCCTTCCTTTACTGTCTAAGGTGC TTAAGGATGCGAAAAGCTCCCTTCTTTCAAATATCTACAAGTCAGTTTGTGCAAATGAAAAATATGATCGTATTAAGGAA AGGATAGGGGAGATTATTGATGAAGATGTGCTTCATGCACGGGTTCCTTTTGTTGCTTGCACTCAGCAATGCTTTGCTGT CAAGGCAGGGATTGATGGTCTCTTGGATATTTCACGAAGATCGTTTTGTGAAACCAGTGAAGCCATCCACAATCTTGCAA ACAATTATCGAGAGGAATTCAAGTTGCCCAATCTAAAGCTTATCTTTAAAAACAGGCAGGGATTCCACTTTGTTATACCA CAGAAGAATGTTCAAGGAAAGCTTCCAAGCAAGTTTATTCAGGTTGTAAAACATGGGAACAACATTCATTGTTCAACTCT GGAACTAGCATCTTTGAATGCTAGGAATAAATCTGCAGCTGCAGAATGCTATACAAGAACAGAGGTTTGTCTGGAAGAAC TTATGGATGCCATTCGTGAGAATGTCTCTGTGTTGACACTGCTTGCTGAGGTGCTCTGCTTGTTGGATATGATTGTGAAT TCATTTGCACATATGATTTCCACAAAGCCTGTTGATAGATATACAAGACCAGAATTTACAGAGAATGGACCAATGGCAAT TGATTCTGGTAGACATCCGATCCTGGAGAGCATACACAATGACTTTGTACCCAACAATATATTTCTGTCTGAAGCCTCAA ATATGGTGATTGTGACCGGGCCCAATATGAGTGGAAAGAGTACTTACCTTCAACAAGTGTGTCTCATAGTCATTCTTGCT CAAGTTGGGTGTTATATTCCTGCCCGCTTCTCAACTCTGAGGGTGGTTGATCGTATGTTTACGAGGATGGGTGCAGTTGA TAATCTTGAATCAAACTCGAGCACATTCATGACAGAGATGAAGGAGACAGCTTTCATCATGCAAAATGTCTCACATAGGA GTCTGGTTGTTATGGATGAACTTGGGAGGGCTACTTCATCGTCTGATGGATTTGCAATTGCATGGAGTTGCTGCGAGCAT CTTTTGTCACTTAAAACGTATACCATATTTGCCACTCATATGGAGAACATGGCAGAATTAGCTACAATCTATCCCAACGT GAAAATTCTTCACTTTCACGTCGACTTGAAAAACAACCATTTAGACTTCAAGTTTCAACTTAAAGAAGGACCAAAGCATA TCCCCCATTATGGCCTTCTCTTAGCAGAAGTGGCAGGATTACCAAGTCCGGTTATTGAGAATGCCAGAATGATCACATCT AGGATTTCAGAGAAGGAAATGAGGAGGATGAAAGTCAATTGCTTGCAATATCATTCTATACAGAGGGCATATCATGTTGC ACAACGCTTATTATGCCTGAAATATTCTAATCAAGATGAGGACACGATTCGGCAAGCTTTGCGAAATCTTAAGGAAACCT GCCTCAACCATAAGCTTTGA
Protein sequence (LotjaGi2g1v0421600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSDRVLCHFCFKPKKDTIEALAVDRAKKSQMLVSSVILLKTALDALPLLSKVLKDAKSSLLSNIYKSVCANEKYDRIKE RIGEIIDEDVLHARVPFVACTQQCFAVKAGIDGLLDISRRSFCETSEAIHNLANNYREEFKLPNLKLIFKNRQGFHFVIP QKNVQGKLPSKFIQVVKHGNNIHCSTLELASLNARNKSAAAECYTRTEVCLEELMDAIRENVSVLTLLAEVLCLLDMIVN SFAHMISTKPVDRYTRPEFTENGPMAIDSGRHPILESIHNDFVPNNIFLSEASNMVIVTGPNMSGKSTYLQQVCLIVILA QVGCYIPARFSTLRVVDRMFTRMGAVDNLESNSSTFMTEMKETAFIMQNVSHRSLVVMDELGRATSSSDGFAIAWSCCEH LLSLKTYTIFATHMENMAELATIYPNVKILHFHVDLKNNHLDFKFQLKEGPKHIPHYGLLLAEVAGLPSPVIENARMITS RISEKEMRRMKVNCLQYHSIQRAYHVAQRLLCLKYSNQDEDTIRQALRNLKETCLNHKL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 308 | 308 | - | – | |
| SMART | 4 | 278 | 275 | 1.1E-4 | ||
| PIRSF | 19 | 538 | 520 | 2.0E-87 | ||
| SUPERFAMILY | 26 | 243 | 218 | 5.36E-26 | ||
| PANTHER | 26 | 533 | 508 | 1.1E-157 | – | |
| PANTHER | 26 | 533 | 508 | 1.1E-157 | – | |
| Gene3D | 32 | 240 | 209 | 1.0E-21 | – | |
| Gene3D | 59 | 186 | 128 | 1.0E-21 | – | |
| Pfam | 110 | 200 | 91 | 8.0E-12 | ||
| Gene3D | 254 | 514 | 261 | 3.9E-87 | – | |
| SUPERFAMILY | 254 | 482 | 229 | 2.99E-48 | ||
| SMART | 293 | 480 | 188 | 1.2E-77 | ||
| Pfam | 296 | 482 | 187 | 6.1E-68 | ||
| Phobius | 309 | 328 | 20 | - | – | |
| Phobius | 329 | 539 | 211 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Mismatch repair | A system for the correction of errors in which an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination. | ||
| Molecular function | Mismatched DNA binding | Interacting selectively and non-covalently with double-stranded DNA containing one or more mismatches. |
Expression pattern of LotjaGi2g1v0421600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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