Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0456000 |
| Transcript ID | LotjaGi2g1v0456000.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phenylalanine--tRNA ligase alpha subunit; TAIR: AT4G39280.1 phenylalanyl-tRNA synthetase, putative / phenylalanine-tRNA ligase; Swiss-Prot: sp|Q9T034|SYFA_ARATH Phenylalanine--tRNA ligase alpha subunit, cytoplasmic; TrEMBL-Plants: tr|A0A151TGA0|A0A151TGA0_CAJCA Putative phenylalanyl-tRNA synthetase alpha chain; Found in the gene: LotjaGi2g1v0456000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:94904683..94909574) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGGAAGAGGCGGTATTGAGTTACCTGGAAAACAACAAAGAAATCTCTGATTCTGGTGAGTTTGCTGCTGAACGTGG CCTTGACCACAATGAAATTGTGAACGTCATCAAGAGCCTTCATGGTTTCAGATACGTCGATGCTGAGGTTGGTAATTCAC CGCATCACTCACATCGTCTTCTTCAGTTAATTGGAATTGGAAATGGTGTTGAATTGCGTGGTTTTTTGTGGACAGGATAT TAAGCGAGAGACATGGGTGCTCACTGATGAGGGAAACACATATACTACTGTGGGATCCCCTGAGGCGCAGCTCATGTTGG CAATACCACCAGAGGGTATCTCAAGAGATGAACTTCAGGTGATTTTGACACTCCTTTGATCTGCACGACTGCACCCAATG CTGAATTTGTAATTTATTTTTACTGATTGCAGAAAAAACTGGGTCCGTCGATTTTTAAGATAGCTTGTGCTCAGGCTGCA AAGAACAAATGGGTGGAGATGGGGAAGCAGCTCATAACTAGGAGGGTATGTAATGAATCTAATGTTAATGTTCCAGTCTT GACATTGTAAAAGATGAGATACTATGTTGTTTTGCTCATCAATTCAGTGTTAGAATATTTTGTTTTGTTGGGGATGTGTG TGTCCATTTGGATTAAGTCATTATGTTTTGGAGATTCAAGCGTGAATGATGAAGTATTTCTTATAAGCTGAATCCTTGCT GCAGGTCGAGCATGTGGATGACAGGGTTAAAGACCTGCTTCTTAAAATACAACAAGGACAGGTGTGTACTAGTATGAATG TTTTTCAGTAAATTTTTAATTCTGTTTGAGAGGAAGCAACTGGAGAAGGACTGCAGATCCTTACCCGTTTTACATTCAAC TGATAAATTTTAGCCTTCTACTCATGTAATGTTTCAGTCTAAGTTCAATAGGAAATTATGAGCTCACTCCTTCCAGTCTT TTACTTCACACACACATCCATTTGGTAATATGCACTTGCTTATTGGGGCTGACAACAGGGTAGTTTTGTTAGTTGTCATC AATCTTTTTTGAATGCTGTGTTTCGGTTATTTGCTCTTAAGCTAGGTCTTGGGTAGTAGGGTTTGTAATGATACTTTTGG TAAAATAGCAAGGTTTTGTATGGAGCACAGATTCAACTCTACATGTGAGACAGTTATAGGAAGTGGAAAGGGGCCAAGAG GGATTTTGAGATGTTTCATTTACCTGCACTTTTGTTTGTGGGTCAGTGGGTGATAGGTAGAGAGTTCTAGGGACAACTAT TTATTAGGAGGGGTTGTTGTTCTTGACCTTTTTGTTTCCCCCTCATGTTTTTATGGGTTACGTGCCCGTTTTCTTGATCA GTTTTCCTTGTGAAATTACATAGCTCATTAAAAGTTTACCTTATGTTGCAAATGCAGGGCATTGGATCAGATGATATCAA AGCACTCAAAACAAGAAAGCTTATTGTTCCACAGTAATAAAAACTTCACCTGATTTTGCAGATATACTGAATGTGCTTGA AATAACTTTGACTATTCTTTTATTATTGAAATTATTCCCGATATCTTACAATGTAGGACATGGAAAGGTTACTCAGTGAA AAAGGGTCCTAACTATGCTCCAAAGAGAAAGAAGGTTGTCACGGATTTGACGCGAGATAATTTTCAGAGGTATTTTTTTC TTAAACTGAATGTAAACTGGAATAAGAGAGGGGTTGGGGGGTTAATTTATTCAAGCTTTTGCTTTGTGTAACATATTTAG TGGATTTGTGACATCATATCCTAAGAACTCTAACTACAATGCATTACTTTGTGACAGTGGTGAATGGAAGGAATTAGAGT TCAAAGAGTACAATTACAGTGCTAAAGGTCAACCTCTAGAGAGTGGCCATCTTCATCCATTGCTGAAGGCAAGCAGATAT ATCCCGTCCCTTCTTCCTCTCCCCAACACCATAGAATAGTAATTACCTTATGGTATTTTAGATTAAATGAATATCGAAGT AGTACACTATAGAAACTATATTTACAATTACCAAAATCCATATTCAGGAAATTAAGTGAAAGCATGACTATTTTGACACA GAAAGTGTTTTATAACACTTTTGATTTCTGTTCCTTGTTATGCATTTTTTGAGCAATTTTTATGTGCACTTTACTATAAT GTATTATGATTTTAATTATGGTATTGTCTTTTTTCAAATATAAAGATCTCTACGTCTCTACCTATCTCATTTTTTGCTGC CAATCGTTGCTTAGTTATTCCCGAGCCTGGATAGAAGAGGGAAATTCTGTTAGATATTCAACAGCTAACATAAAATTTTG TCAGCTCTCTATGATGTGTACCAACAATTTGAATGCTTTATATCCAAAATTTGTTTTCTGATAGAACAATAGTGTGTTTG GTCAGTGCAGTTGACCTCATGGAAAATATCAGACTTGTTATTTTTGTTGATTATTTTTCTTTTACCACTCCCAAAAATGA AAAGAAAAAGAAAAGAAGATTGATGATACACTGTGTATTTATTTAATACTTCTGGAAATCTCTTCATATTCAGGTACGGG CTCAACTGAAACAGATTTTCCTCTGCATGGGGTGAGTACAATCTGTGTTATGCAGGACCCTGATGATTTTATGGTAAATG ATTGTTTCAACCTTCCAAGTTTAACATTTTGTAACGATAATCTGCTGCTGCAGATTTGAAGAGATGCCGACAAATAATTT TGTTGAGAGCAGGTACTTGTTGTTTCCATATCAATAACATCCAAATCATTTTGCTAATCTGCATGATCCTTTTATTCTTG CTTATATATATGTTATTTATAAGTTTATCATTAAAAGCATTGAAGTACAGCAAATTATACTCGTGTATATGGAAAGTAGC TGCGCATGTTCGCTTTCACTTTAAAGCTAACTTCACATCTGAATGATTTAATCGGCAGCTTCTGGAACTTTGATGCCTTG TTCCAGCCCCAGCAACACCCAGCCCGTGATTCGCATGACACATTTTTTTTGGAAGGTTGGTAAAACCTTGATTTCTTCCA GGCTAGTCTAGTCTTCTGTGTTTCCATCTTGACTATATGTGACACGTATCTGCAGCTCCTTCAACAACAAAAGAACTGCC TGAAGATTATGTTCAGCGTGTGCAACAAGTTCACGAATCTGGTGGTTATGGGTCCAGGGGGTATGAGCTTGAGCACCCTC TATGCACTTTTAGCTTAGGCTATTTAATTATAGACAGATAAGTTGCATACTATTTTCTGAGGGAAACCTTACAATTTATT CCTTGGTAGGTATGCATATATCTGGAAAAGAGAGGAAGCAAATAAAAATCTCTTGCGGACCCACACAACTGCTGTTTCCT CCCGGATGCTTTACCAGCTGGCACAGGTGTGCATCTTTACATGATTTTTTTTCGGTATAATGTTCTTTTGGTTGCATATG ATTGTGTGGTGCTTGGTGCCATTGGGCCTCCTTCTATTCTATTTTTTTCTGTATTATTTACATTTAATGATTGAAATTTC TAAGTAATGTATTTTCATATGTTTAAGCTGGAATGCTGGATTAAGAAATTTTACTGTGACACTCTGTATTCTACTTTTTA CTTGTCTCTCCTTCCACACCAATAAGTGATTATACTTTCCAAGTTCTTGCTCTGAATTACAGTTTGTATCCTTCTATCTC CCCATTTTAATGCAGAAACCATTCTCTCCAAAAAAATATTTCTCCATAGATCGTGTGTTCAGAAATGAAGCAGTTGATCG GACACATCTTGCTGAGTTCCACCAGATAGAAGGTATGTGAGAGCTAGTAAGTTACTGGGCTTGGGATTTAGTTCATTTCA AATTGTTTTGCGAATGGTGAACATTTCACATTTGATGGTCCTATTACAATTTTTATTTCACGTTATGGTAAAGAAGGGGT TGGGGGCATTAATATTATTGGTATAGAGTTCAGCTTCTGCTTTGGTTTAACCTACCAGGGGTTTTAATCTCAATTAAAAT TTGTCAAAATATTCTGAATTTTTAGGTCTCATGTTTTGCACTTTGATTCAGGCCTTGTATGCGATAGAGGGCTCACACTT TGTGACTTAATAGGAGTTCTACATGATTTTTTCTCACGCATGGGTAATGCTCTCTTATGCCGAAATACTTTGTATGGTTT AAATGTTGAATGCAAGTTGGGAACTTAATTAATATGTTATTGATCTTAGCTAAAAACTTTGTTCTTGAGTTCAGGAATGA CCAAGCTGAAGTTCAAACCTGCTTACAATCCATATACCGAACCTAGCATGGAGATTTTCAGGTGAGTCTTTCTGTAATGA ATATTTGTTATCTTTTGTTCCTTATCTTGATATCCTGAGATTTGATGTATTAATCAAGTACTCTTATTAGTTATCATGAA GGGTTTAAAAAATGGGTAGAGGTAGGAAACTCTGGCATGTTTAGACCTGAAATGTTGCAACCAATGGGTCTTCCTGAAGA TGTCCAAGTTATTGCATGGGGACTTTCCCTTGAAAGGTGAGGAAAAAAAAACTTAGTTTTTGCTGAGAATAAAATGAATT GTTTTGTCAAATGCAATTTCTTGTTACAAAATTCTGTTAAAATCTAATGGAACTATGGGAGAAGTGCAGTTTTTAACTTG TTATTTTACATGGAAACAGACCAACGATGATACTATATGGGATAGATAACATCAGGGATCTCTTTGGACACAAGGTATGG CTAAAATGATTATAAAGATGGAGCTATGTGGCAACTCTGTCATTATTATTCTTAAAATTAAAATAGTTATGTGTTATTGT TCTAAGCCATGTTTTTTAATTTTTTTTCTTTTTTGCAGGTGGATCTTGGCCTAATAAAGAAAAATCCTATATGTCGTCTT GGAATTGACTAG
CDS sequence (LotjaGi2g1v0456000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGAAGAGGCGGTATTGAGTTACCTGGAAAACAACAAAGAAATCTCTGATTCTGGTGAGTTTGCTGCTGAACGTGG CCTTGACCACAATGAAATTGTGAACGTCATCAAGAGCCTTCATGGTTTCAGATACGTCGATGCTGAGGATATTAAGCGAG AGACATGGGTGCTCACTGATGAGGGAAACACATATACTACTGTGGGATCCCCTGAGGCGCAGCTCATGTTGGCAATACCA CCAGAGGGTATCTCAAGAGATGAACTTCAGAAAAAACTGGGTCCGTCGATTTTTAAGATAGCTTGTGCTCAGGCTGCAAA GAACAAATGGGTGGAGATGGGGAAGCAGCTCATAACTAGGAGGGTCGAGCATGTGGATGACAGGGTTAAAGACCTGCTTC TTAAAATACAACAAGGACAGGGCATTGGATCAGATGATATCAAAGCACTCAAAACAAGAAAGCTTATTGTTCCACAGACA TGGAAAGGTTACTCAGTGAAAAAGGGTCCTAACTATGCTCCAAAGAGAAAGAAGGTTGTCACGGATTTGACGCGAGATAA TTTTCAGAGTGGTGAATGGAAGGAATTAGAGTTCAAAGAGTACAATTACAGTGCTAAAGGTCAACCTCTAGAGAGTGGCC ATCTTCATCCATTGCTGAAGGTACGGGCTCAACTGAAACAGATTTTCCTCTGCATGGGATTTGAAGAGATGCCGACAAAT AATTTTGTTGAGAGCAGCTTCTGGAACTTTGATGCCTTGTTCCAGCCCCAGCAACACCCAGCCCGTGATTCGCATGACAC ATTTTTTTTGGAAGCTCCTTCAACAACAAAAGAACTGCCTGAAGATTATGTTCAGCGTGTGCAACAAGTTCACGAATCTG GTGGTTATGGGTCCAGGGGGTATGCATATATCTGGAAAAGAGAGGAAGCAAATAAAAATCTCTTGCGGACCCACACAACT GCTGTTTCCTCCCGGATGCTTTACCAGCTGGCACAGAAACCATTCTCTCCAAAAAAATATTTCTCCATAGATCGTGTGTT CAGAAATGAAGCAGTTGATCGGACACATCTTGCTGAGTTCCACCAGATAGAAGGCCTTGTATGCGATAGAGGGCTCACAC TTTGTGACTTAATAGGAGTTCTACATGATTTTTTCTCACGCATGGGAATGACCAAGCTGAAGTTCAAACCTGCTTACAAT CCATATACCGAACCTAGCATGGAGATTTTCAGTTATCATGAAGGGTTTAAAAAATGGGTAGAGGTAGGAAACTCTGGCAT GTTTAGACCTGAAATGTTGCAACCAATGGGTCTTCCTGAAGATGTCCAAGTTATTGCATGGGGACTTTCCCTTGAAAGAC CAACGATGATACTATATGGGATAGATAACATCAGGGATCTCTTTGGACACAAGGTGGATCTTGGCCTAATAAAGAAAAAT CCTATATGTCGTCTTGGAATTGACTAG
Protein sequence (LotjaGi2g1v0456000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEEAVLSYLENNKEISDSGEFAAERGLDHNEIVNVIKSLHGFRYVDAEDIKRETWVLTDEGNTYTTVGSPEAQLMLAIP PEGISRDELQKKLGPSIFKIACAQAAKNKWVEMGKQLITRRVEHVDDRVKDLLLKIQQGQGIGSDDIKALKTRKLIVPQT WKGYSVKKGPNYAPKRKKVVTDLTRDNFQSGEWKELEFKEYNYSAKGQPLESGHLHPLLKVRAQLKQIFLCMGFEEMPTN NFVESSFWNFDALFQPQQHPARDSHDTFFLEAPSTTKELPEDYVQRVQQVHESGGYGSRGYAYIWKREEANKNLLRTHTT AVSSRMLYQLAQKPFSPKKYFSIDRVFRNEAVDRTHLAEFHQIEGLVCDRGLTLCDLIGVLHDFFSRMGMTKLKFKPAYN PYTEPSMEIFSYHEGFKKWVEVGNSGMFRPEMLQPMGLPEDVQVIAWGLSLERPTMILYGIDNIRDLFGHKVDLGLIKKN PICRLGID
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 3 | 56 | 54 | 1.3E-9 | ||
| Gene3D | 7 | 199 | 193 | 5.6E-56 | – | |
| PANTHER | 18 | 474 | 457 | 4.9E-201 | – | |
| PANTHER | 18 | 474 | 457 | 4.9E-201 | – | |
| Gene3D | 58 | 156 | 99 | 5.6E-56 | – | |
| Pfam | 70 | 125 | 56 | 1.3E-14 | ||
| Gene3D | 71 | 125 | 55 | 5.6E-56 | – | |
| TIGRFAM | 165 | 479 | 315 | 2.4E-106 | ||
| SUPERFAMILY | 201 | 473 | 273 | 1.28E-72 | – | |
| Pfam | 201 | 473 | 273 | 8.1E-93 | ||
| Gene3D | 216 | 488 | 273 | 3.7E-116 | – | |
| CDD | 216 | 473 | 258 | 6.59591E-112 | – | |
| ProSiteProfiles | 220 | 481 | 262 | 17.287 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | TRNA binding | Interacting selectively and non-covalently with transfer RNA. | ||
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | Phenylalanine-tRNA ligase activity | Catalysis of the reaction: ATP + L-phenylalanine + tRNA(Phe) = AMP + diphosphate + L-phenylalanyl-tRNA(Phe). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | Phenylalanyl-tRNA aminoacylation | The process of coupling phenylalanine to phenylalanyl-tRNA, catalyzed by phenylalanyl-tRNA synthetase. The phenylalanyl-tRNA synthetase is a class-II synthetase. However, unlike other class II enzymes, The activated amino acid is transferred to the 2'-OH group of a phenylalanine-accepting tRNA. The 2'-O-aminoacyl-tRNA will ultimately migrate to the 3' position via transesterification. | ||
| Biological process | TRNA aminoacylation | The chemical reactions and pathways by which the various amino acids become bonded to their corresponding tRNAs. The most common route for synthesis of aminoacyl tRNA is by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, usually catalyzed by the cognate aminoacyl-tRNA ligase. A given aminoacyl-tRNA ligase aminoacylates all species of an isoaccepting group of tRNA molecules. |
Expression pattern of LotjaGi2g1v0456000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…