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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0139100 |
Transcript ID | LotjaGi3g1v0139100.4 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Elongation factor; TAIR: AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein; Swiss-Prot: sp|Q9ASR1|EF2_ARATH Elongation factor 2; TrEMBL-Plants: tr|I1KU21|I1KU21_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0139100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:18294847..18297315) extracted from Lotus japonicus Gifu genome v1.2.
AATTTATTCTTTTGGTTCCTTATTGCAGGAAAATCCACTCTCACTGATTCTCTGGTGGCTGCTGCTGGAATTATTGCACA AGAAGTAGCAGGTGATGTCCGTATGACTGATACCCGTGCAGATGAAGCTGAGCGTGGTATTACAATTAAGTCTACTGGTA TCTCACTGTACTATGAAATGACTGATGTGGCTCTCAAGAGTTTCAAGGGAGAGAGAATGGGCAATGAGTATCTCATTAAT CTCATCGACTCCCCTGGGCACGTCGACTTCTCATCTGAGGTTACTGCTGCACTTCGTATTACTGATGGAGCCCTTGTTGT GGTGGATTGTGTTGAAGGTGTCTGTGTCCAAACTGAAACTGTGCTACGACAGGCCTTGGGAGAAAGGATTAAGCCTGTTC TGACTGTCAATAAGATGGACAGATGCTTCCTTGAATTGCAGGTGGATGGAGAGGAGGCCTATCAGACTTTTAGCCGTGTT ATTGAGAATGCTAATGTGATCATGGCTACATATGAAGACCCACTGCTTGGTGATTGTATGGTCTACCCAGAGAAAGGAAC AGTTGCTTTCTCTGCTGGTCTTCATGGCTGGGCTTTTACTTTGACAAACTTTGCAAAAATGTATGCCTCAAAATTTGGTG TTGACGAGTCAAAGATGATGGAAAGGCTCTGGGGTGAGAACTTTTTTGATCCAGCCACCAAGAAATGGACCACCAAGAAT ACTGGTTCAGCTACCTGCAAGCGAGGGTTCGTTCAGTTCTGTTATGAACCTATCAAGCAGATTATTAACACTTGTATGAA TGATCAGAAGGATAAGCTGTGGCCTATGCTGCAAAAGCTAGGAGTCGTCATGAAATCTGATGAGAAGGACCTGATGGGTA AACCATTGATGAAACGTGTCATGCAGACATGGCTCCCAGCAGCTAGTGCTCTCTTGGAAATGATGATCTTTCATCTTCCT TCTCCATCAACAGCCCAGAGATACCGTGTTGAGAATTTGTATGAGGGTCCCCTTGATGATCAATATGCTACTGCTATCAG AAACTGTGATCCTGAGGGACCTCTGATGCTTTATGTCTCAAAGATGATTCCTGCCTCTGACAAGGGTAGGTTTTTTGCCT TTGGCCGTGTCTTCTCTGGTAAGGTTTCAACTGGTTTGAAAGTCAGGATTATGGGACCAAATTATGTTCCTGGAGAGAAA AAAGACCTGTATACTAAAAGTGTTCAAAGAACTGTCATTTGGATGGGAAAGAAACAGGAGACTGTTGAGGATGTTCCTTG TGGTAACACAGTTGCTTTGGTTGGTTTGGATCAATTTATCACCAAGAATGCTACATTGACAAATGAGAAGGAAACTGATG CTCACCCAATTCGTGCTATGAAGTTTTCTGTCTCCCCTGTTGTCCGTGTTGCTGTTCAGTGTAAGGTTGCATCTGATCTT CCTAAGCTTGTTGAAGGTCTTAAACGGTTGGCTAAATCAGATCCTATGGTTGTTTGTACTATTGAGGAGTCTGGAGAACA CATTGTTGCTGGTGCAGGAGAGCTTCATCTTGAGATCTGTTTGAAGGACTTGCAAGATGATTTCATGGGTGGAGCTGAGA TTGTTAAATCTGACCCTGTTGTGTCTTTCCGAGAGACAGTTCTAGAGAGATCATGCCGCACTGTGATGAGTAAGTCACCC AACAAGCACAACCGTCTGTACATGGAAGCAAGACCACTGGAGGACGGGCTTGCAGAAGCTATTGATGATGGCAAGATTGG ACCAAGGGATGACCCCAAAGTTCGTTCCAAAATCTTGTCCGAAGAATATGGTTGGGACAAGGATCTTGCCAAGAAAATCT GGTGTTTCGGACCTGAGACCCTTGGACCAAACATGGTGGTTGATATGTGTAAGGGAGTCCAGTATTTGAACGAAATCAAG GATTCTGTCGTTGCCGGATTCCAGTGGGCATCAAAAGAAGGTGCTTTGGCTGAAGAAAACATGAGGGCCATTTGCTTTGA AGTGTGTGATGTTGTCCTGCATGCTGATGCCATCCACAGAGGTGGTGGTCAGATCATTCCTACAGCTAGGAGAGTGTTCT ATGCTTCCCAGTTGACTGCCAAACCCAGGCTCCTTGAGCCTGTTTACCTGGTGGAAATCCAGGCTCCTGAGCAAGCCCTT GGTGGTATCTACAGTGTTCTGAATCAGAAACGTGGACACGTCTTTGAGGAAATGCAGAGGCAAGGTACCCCACTTTACAA CATCAAAGCATACCTCCCTGTCGTCGAATCCTTCGGATTCTCTGGCACTTTGAGGGCTGCAACATCAGGGCAGGCTTTCC CACAGTGTGTCTTTGATCATTGGGATATGATGTCCTCAGATCCATTGGAGTCTGGCTCACAAGCTGCAACGCTTGTTACT GACATTCGTAAGAGGAAGGGTTTGAAGGAGCAGATGACTCCACTCTCTGAGTTTGAAGACAAGCTTTAA
CDS sequence (LotjaGi3g1v0139100.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTGATACCCGTGCAGATGAAGCTGAGCGTGGTATTACAATTAAGTCTACTGGTATCTCACTGTACTATGAAATGAC TGATGTGGCTCTCAAGAGTTTCAAGGGAGAGAGAATGGGCAATGAGTATCTCATTAATCTCATCGACTCCCCTGGGCACG TCGACTTCTCATCTGAGGTTACTGCTGCACTTCGTATTACTGATGGAGCCCTTGTTGTGGTGGATTGTGTTGAAGGTGTC TGTGTCCAAACTGAAACTGTGCTACGACAGGCCTTGGGAGAAAGGATTAAGCCTGTTCTGACTGTCAATAAGATGGACAG ATGCTTCCTTGAATTGCAGGTGGATGGAGAGGAGGCCTATCAGACTTTTAGCCGTGTTATTGAGAATGCTAATGTGATCA TGGCTACATATGAAGACCCACTGCTTGGTGATTGTATGGTCTACCCAGAGAAAGGAACAGTTGCTTTCTCTGCTGGTCTT CATGGCTGGGCTTTTACTTTGACAAACTTTGCAAAAATGTATGCCTCAAAATTTGGTGTTGACGAGTCAAAGATGATGGA AAGGCTCTGGGGTGAGAACTTTTTTGATCCAGCCACCAAGAAATGGACCACCAAGAATACTGGTTCAGCTACCTGCAAGC GAGGGTTCGTTCAGTTCTGTTATGAACCTATCAAGCAGATTATTAACACTTGTATGAATGATCAGAAGGATAAGCTGTGG CCTATGCTGCAAAAGCTAGGAGTCGTCATGAAATCTGATGAGAAGGACCTGATGGGTAAACCATTGATGAAACGTGTCAT GCAGACATGGCTCCCAGCAGCTAGTGCTCTCTTGGAAATGATGATCTTTCATCTTCCTTCTCCATCAACAGCCCAGAGAT ACCGTGTTGAGAATTTGTATGAGGGTCCCCTTGATGATCAATATGCTACTGCTATCAGAAACTGTGATCCTGAGGGACCT CTGATGCTTTATGTCTCAAAGATGATTCCTGCCTCTGACAAGGGTAGGTTTTTTGCCTTTGGCCGTGTCTTCTCTGGTAA GGTTTCAACTGGTTTGAAAGTCAGGATTATGGGACCAAATTATGTTCCTGGAGAGAAAAAAGACCTGTATACTAAAAGTG TTCAAAGAACTGTCATTTGGATGGGAAAGAAACAGGAGACTGTTGAGGATGTTCCTTGTGGTAACACAGTTGCTTTGGTT GGTTTGGATCAATTTATCACCAAGAATGCTACATTGACAAATGAGAAGGAAACTGATGCTCACCCAATTCGTGCTATGAA GTTTTCTGTCTCCCCTGTTGTCCGTGTTGCTGTTCAGTGTAAGGTTGCATCTGATCTTCCTAAGCTTGTTGAAGGTCTTA AACGGTTGGCTAAATCAGATCCTATGGTTGTTTGTACTATTGAGGAGTCTGGAGAACACATTGTTGCTGGTGCAGGAGAG CTTCATCTTGAGATCTGTTTGAAGGACTTGCAAGATGATTTCATGGGTGGAGCTGAGATTGTTAAATCTGACCCTGTTGT GTCTTTCCGAGAGACAGTTCTAGAGAGATCATGCCGCACTGTGATGAGTAAGTCACCCAACAAGCACAACCGTCTGTACA TGGAAGCAAGACCACTGGAGGACGGGCTTGCAGAAGCTATTGATGATGGCAAGATTGGACCAAGGGATGACCCCAAAGTT CGTTCCAAAATCTTGTCCGAAGAATATGGTTGGGACAAGGATCTTGCCAAGAAAATCTGGTGTTTCGGACCTGAGACCCT TGGACCAAACATGGTGGTTGATATGTGTAAGGGAGTCCAGTATTTGAACGAAATCAAGGATTCTGTCGTTGCCGGATTCC AGTGGGCATCAAAAGAAGGTGCTTTGGCTGAAGAAAACATGAGGGCCATTTGCTTTGAAGTGTGTGATGTTGTCCTGCAT GCTGATGCCATCCACAGAGGTGGTGGTCAGATCATTCCTACAGCTAGGAGAGTGTTCTATGCTTCCCAGTTGACTGCCAA ACCCAGGCTCCTTGAGCCTGTTTACCTGGTGGAAATCCAGGCTCCTGAGCAAGCCCTTGGTGGTATCTACAGTGTTCTGA ATCAGAAACGTGGACACGTCTTTGAGGAAATGCAGAGGCAAGGTACCCCACTTTACAACATCAAAGCATACCTCCCTGTC GTCGAATCCTTCGGATTCTCTGGCACTTTGAGGGCTGCAACATCAGGGCAGGCTTTCCCACAGTGTGTCTTTGATCATTG GGATATGATGTCCTCAGATCCATTGGAGTCTGGCTCACAAGCTGCAACGCTTGTTACTGACATTCGTAAGAGGAAGGGTT TGAAGGAGCAGATGACTCCACTCTCTGAGTTTGAAGACAAGCTTTAA
Protein sequence (LotjaGi3g1v0139100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTDTRADEAERGITIKSTGISLYYEMTDVALKSFKGERMGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGV CVQTETVLRQALGERIKPVLTVNKMDRCFLELQVDGEEAYQTFSRVIENANVIMATYEDPLLGDCMVYPEKGTVAFSAGL HGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTTKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLW PMLQKLGVVMKSDEKDLMGKPLMKRVMQTWLPAASALLEMMIFHLPSPSTAQRYRVENLYEGPLDDQYATAIRNCDPEGP LMLYVSKMIPASDKGRFFAFGRVFSGKVSTGLKVRIMGPNYVPGEKKDLYTKSVQRTVIWMGKKQETVEDVPCGNTVALV GLDQFITKNATLTNEKETDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGE LHLEICLKDLQDDFMGGAEIVKSDPVVSFRETVLERSCRTVMSKSPNKHNRLYMEARPLEDGLAEAIDDGKIGPRDDPKV RSKILSEEYGWDKDLAKKIWCFGPETLGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRAICFEVCDVVLH ADAIHRGGGQIIPTARRVFYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRQGTPLYNIKAYLPV VESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLESGSQAATLVTDIRKRKGLKEQMTPLSEFEDKL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
ProSiteProfiles | 1 | 289 | 289 | 42.472 | ||
PANTHER | 1 | 788 | 788 | 0.0 | – | |
PANTHER | 1 | 788 | 788 | 0.0 | – | |
SUPERFAMILY | 2 | 286 | 285 | 2.04E-86 | ||
Pfam | 2 | 287 | 286 | 6.1E-46 | ||
ProSitePatterns | 3 | 18 | 16 | - | ||
Gene3D | 7 | 287 | 281 | 9.5E-171 | – | |
PRINTS | 10 | 18 | 9 | 4.0E-7 | ||
Gene3D | 12 | 414 | 403 | 9.5E-171 | – | |
PRINTS | 46 | 56 | 11 | 4.0E-7 | ||
PRINTS | 62 | 73 | 12 | 4.0E-7 | ||
PRINTS | 98 | 107 | 10 | 4.0E-7 | ||
Gene3D | 167 | 271 | 105 | 9.5E-171 | – | |
SUPERFAMILY | 287 | 421 | 135 | 5.52E-41 | ||
CDD | 320 | 415 | 96 | 1.30799E-42 | – | |
Pfam | 339 | 412 | 74 | 4.4E-10 | ||
SUPERFAMILY | 429 | 505 | 77 | 6.12E-18 | ||
Gene3D | 430 | 508 | 79 | 2.7E-32 | – | |
Pfam | 432 | 494 | 63 | 8.0E-12 | ||
CDD | 432 | 504 | 73 | 9.78404E-38 | – | |
CDD | 504 | 676 | 173 | 1.53919E-100 | – | |
SUPERFAMILY | 507 | 671 | 165 | 3.29E-65 | ||
Gene3D | 510 | 774 | 265 | 3.2E-123 | – | |
Gene3D | 516 | 778 | 263 | 3.2E-123 | ||
SMART | 550 | 667 | 118 | 5.1E-25 | ||
Pfam | 555 | 667 | 113 | 7.2E-30 | ||
SMART | 669 | 758 | 90 | 1.6E-19 | ||
Pfam | 669 | 756 | 88 | 2.3E-20 | ||
SUPERFAMILY | 672 | 783 | 112 | 1.87E-30 | ||
CDD | 672 | 750 | 79 | 8.31016E-48 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi3g1v0139100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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